HHsearch alignment for GI: 254780270 and conserved domain: PRK08058
>PRK08058 DNA polymerase III subunit delta'; Validated.
Probab=98.57 E-value=2.9e-07 Score=73.79 Aligned_cols=133 Identities=20% Similarity=0.279 Sum_probs=86.5
Q ss_pred HHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE--EEECCCCCCHHHHCCCCCCCCCCCC--------H---HH--
Q ss_conf 8424446735998605656502799999977088249--9861888888883563200145671--------2---89--
Q gi|254780270|r 359 MRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYV--RMSLGGVYDEADIRGHRRTYIGSMP--------G---RI-- 423 (820)
Q Consensus 359 ~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~--~islgg~~d~~~i~gh~~ty~ga~p--------g---~i-- 423 (820)
T Consensus 21 ~i~~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~LlC~~~~~~~~Cg~C~~------C~~~~~~~HPD~~~i~p~~~~i~idq 94 (329)
T PRK08058 21 SIAKNRLAHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTN------CKRIESGNHPDVHLVAPDGQSIKKDQ 94 (329)
T ss_pred HHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH------HHHHHCCCCCCEEEECCCCCCCCHHH
T ss_conf 998599661565578999889999999999973999999998878889------99987699997677456614077999
Q ss_pred HHHHHHC------CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCH
Q ss_conf 9999832------788739999331554231177115566554060016813320103523644279999348655-441
Q gi|254780270|r 424 IQSLKRA------KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPL 496 (820)
Q Consensus 424 i~~l~~~------~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~ 496 (820)
T Consensus 95 iR~L~~~~~~~p~~g~~KV~II~~Ae~m~~~----AaNALLKtLE-------------EPp--~~t~fIL~t~~~~~lLp 155 (329)
T PRK08058 95 IRYLKEEFSKSGVESNKKVYIIEHADKMTAS----AANSLLKFLE-------------EPS--GDTTAILLTENKHQILP 155 (329)
T ss_pred HHHHHHHHCCCCCCCCCEEEEEECHHHHCHH----HHHHHHHHHH-------------CCC--CCCEEEEEECCHHHHHH
T ss_conf 9999999643875788679997347762999----9999999864-------------689--78679987299666436
Q ss_pred HHCCCEEEEEECCCCHHHHH
Q ss_conf 31172479982587868999
Q gi|254780270|r 497 PLMDRMEIIRIAGYTEEEKL 516 (820)
Q Consensus 497 ~l~drme~i~~~~y~~~ek~ 516 (820)
T Consensus 156 TI~SRCq~i~f~~~~~~~i~ 175 (329)
T PRK08058 156 TILSRCQVVEFRPLPPESLI 175 (329)
T ss_pred HHHHCCEEEECCCCCHHHHH
T ss_conf 88631425658899999999