HHsearch alignment for GI: 254780270 and conserved domain: PRK08084
>PRK08084 DNA replication initiation factor; Provisional.
Probab=98.67 E-value=3e-06 Score=66.17 Aligned_cols=186 Identities=16% Similarity=0.270 Sum_probs=120.2
Q ss_pred HHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH---HCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 9998424446735998605656502799999977---0882499861888888883563200145671289999983278
Q gi|254780270|r 356 AVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKA---TGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKR 432 (820)
Q Consensus 356 av~~~~~~~~g~il~l~gppgvGKts~~~sia~a---l~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~ 432 (820)
T Consensus 35 al~~~~~~~~~~~l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl~~~~~~--------------~~~~~~l~~l~~--- 97 (235)
T PRK08084 35 ALQNVLRQEHSGYIYLWGREGAGRSHLLHAACAELSQRGDAVGYVPLDKRA--------------WFVPEVLEGMEQ--- 97 (235)
T ss_pred HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHH--------------HHHHHHHHHHHH---
T ss_conf 999998578987699989999888999999999997079857998779866--------------517999987641---
Q ss_pred CCEEEEEECHHHHHHHCCCCH--HHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC--CCC---HHHCCCE---
Q ss_conf 873999933155423117711--556655406001681332010352364427999934865--544---1311724---
Q gi|254780270|r 433 SNPLLLLDEIDKMGSDLRGDP--SAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL--NIP---LPLMDRM--- 502 (820)
Q Consensus 433 ~npv~~ldeidk~~~~~~gdp--~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~--~i~---~~l~drm--- 502 (820)
T Consensus 98 -~dll~iDDi~~i~----g~~~~ee~lF~l~N~-------------~~~~g~~~ll~ts~~~P~~l~~~l~DL~SRl~~g 159 (235)
T PRK08084 98 -LSLVCIDNIECIA----GDELWEMAIFDLYNR-------------ILESGKTRLLITGDRPPRQLNLGLPDLASRLDWG 159 (235)
T ss_pred -CCEEEEECHHHHC----CCHHHHHHHHHHHHH-------------HHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHCC
T ss_conf -8989982745546----997899999999999-------------9984896699967988243023128899999569
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 79982587868999899986089899862578131322899999997317741023478887999989876542117852
Q gi|254780270|r 503 EIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDT 582 (820)
Q Consensus 503 e~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~ 582 (820)
T Consensus 160 ~~~~i~~~dde~~~~iL~~~-----a~~r-----gl~l~~~V~~yl~~~~~R~--~~~L~~~l~~Ld~~Sl~-------~ 220 (235)
T PRK08084 160 QIYKLQPLSDEEKLQALQLR-----ARLR-----GFELPEDVGRFLLKRLDRE--MRTLFMTLDQLDKASIT-------A 220 (235)
T ss_pred CEEEECCCCHHHHHHHHHHH-----HHHC-----CCCCCHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHH-------C
T ss_conf 72785599989999999999-----9973-----9999989999999861588--99999999999999998-------1
Q ss_pred EECCCHHHHHHHH
Q ss_conf 0127967867530
Q gi|254780270|r 583 TVSINENNLQDYL 595 (820)
Q Consensus 583 ~~~i~~~~l~~~l 595 (820)
T Consensus 221 kr~iTip~vkevL 233 (235)
T PRK08084 221 QRKLTIPFVKEIL 233 (235)
T ss_pred CCCCCHHHHHHHH
T ss_conf 9999999999996