HHsearch alignment for GI: 254780270 and conserved domain: PRK08181
>PRK08181 transposase; Validated.
Probab=97.01 E-value=0.00042 Score=49.86 Aligned_cols=126 Identities=25% Similarity=0.386 Sum_probs=68.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 67359986056565027999999770---882499861888888883563200145671289999983278873999933
Q gi|254780270|r 365 KGLILCFVGPPGVGKTSLAQSIAKAT---GRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDE 441 (820)
Q Consensus 365 ~g~il~l~gppgvGKts~~~sia~al---~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~lde 441 (820)
T Consensus 105 ~~~Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~~~~L~--~~L~~a~~------~~~~~~~~~~l-~~~dLLIiDe 175 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLV--QKLQVARR------ELQLESAIAKL-DKFDLLILDD 175 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHH--HHHHHHHH------CCCHHHHHHHH-HCCCEEEEHH
T ss_conf 487089989999878899999999999879939997899999--99999775------58399999997-4446012201
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC-----------CCCCHHHCCCE----EEEE
Q ss_conf 15542311771155665540600168133201035236442799993486-----------55441311724----7998
Q gi|254780270|r 442 IDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT-----------LNIPLPLMDRM----EIIR 506 (820)
Q Consensus 442 idk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~-----------~~i~~~l~drm----e~i~ 506 (820)
T Consensus 176 ~G~~~~~--~~~~~~lf~lI~~Rye~~------------S---~IITSn~~~~~W~~~f~D~~la~AiLDRLvH~a~~i~ 238 (269)
T PRK08181 176 LAYVTKD--QAETSVLFELISARYERR------------S---ILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFE 238 (269)
T ss_pred CCCCCCC--HHHHHHHHHHHHHHHCCC------------C---EEEECCCCHHHHHHHCCCHHHHHHHHHHHHCCEEEEE
T ss_conf 0566799--899999999999985788------------8---8998899977887753868899999998701528997
Q ss_pred ECCCCHHHHH
Q ss_conf 2587868999
Q gi|254780270|r 507 IAGYTEEEKL 516 (820)
Q Consensus 507 ~~~y~~~ek~ 516 (820)
T Consensus 239 l~GeSyR~k~ 248 (269)
T PRK08181 239 MNVESYRRRT 248 (269)
T ss_pred ECCCCCCCHH
T ss_conf 5587612056