HHsearch alignment for GI: 254780270 and conserved domain: PRK08181

>PRK08181 transposase; Validated.
Probab=97.01  E-value=0.00042  Score=49.86  Aligned_cols=126  Identities=25%  Similarity=0.386  Sum_probs=68.5

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEC
Q ss_conf             67359986056565027999999770---882499861888888883563200145671289999983278873999933
Q gi|254780270|r  365 KGLILCFVGPPGVGKTSLAQSIAKAT---GRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDE  441 (820)
Q Consensus       365 ~g~il~l~gppgvGKts~~~sia~al---~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~lde  441 (820)
T Consensus       105 ~~~Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~~~~L~--~~L~~a~~------~~~~~~~~~~l-~~~dLLIiDe  175 (269)
T PRK08181        105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLV--QKLQVARR------ELQLESAIAKL-DKFDLLILDD  175 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHH--HHHHHHHH------CCCHHHHHHHH-HCCCEEEEHH
T ss_conf             487089989999878899999999999879939997899999--99999775------58399999997-4446012201


Q ss_pred             HHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC-----------CCCCHHHCCCE----EEEE
Q ss_conf             15542311771155665540600168133201035236442799993486-----------55441311724----7998
Q gi|254780270|r  442 IDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT-----------LNIPLPLMDRM----EIIR  506 (820)
Q Consensus       442 idk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~-----------~~i~~~l~drm----e~i~  506 (820)
T Consensus       176 ~G~~~~~--~~~~~~lf~lI~~Rye~~------------S---~IITSn~~~~~W~~~f~D~~la~AiLDRLvH~a~~i~  238 (269)
T PRK08181        176 LAYVTKD--QAETSVLFELISARYERR------------S---ILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFE  238 (269)
T ss_pred             CCCCCCC--HHHHHHHHHHHHHHHCCC------------C---EEEECCCCHHHHHHHCCCHHHHHHHHHHHHCCEEEEE
T ss_conf             0566799--899999999999985788------------8---8998899977887753868899999998701528997


Q ss_pred             ECCCCHHHHH
Q ss_conf             2587868999
Q gi|254780270|r  507 IAGYTEEEKL  516 (820)
Q Consensus       507 ~~~y~~~ek~  516 (820)
T Consensus       239 l~GeSyR~k~  248 (269)
T PRK08181        239 MNVESYRRRT  248 (269)
T ss_pred             ECCCCCCCHH
T ss_conf             5587612056