HHsearch alignment for GI: 254780270 and conserved domain: PRK08939

>PRK08939 primosomal protein DnaI; Reviewed.
Probab=98.16  E-value=6e-05  Score=56.31  Aligned_cols=88  Identities=26%  Similarity=0.291  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf             99999999998424446735998605656502799999977088249986188888888356320014567128999998
Q gi|254780270|r  349 ERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLK  428 (820)
Q Consensus       349 ~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~  428 (820)
T Consensus       142 ~~a~~F~~--~y~~~~~~kGlyl~G~~G~GKTyL~~aian~La~~g~~v~~v~~--p~~~~~lK~s~~d~s~~~~i~~~k  217 (306)
T PRK08939        142 MAALDFLE--AYKPGEKVKGLYLYGDFGVGKTYLLAAIANELAKKGVSSTLVHF--PEFIRELKNAISDGSVKEKIDAVK  217 (306)
T ss_pred             HHHHHHHH--HHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEH--HHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             99999999--73769888778898999998999999999999986992999875--999999999864898899999984


Q ss_pred             HCCCCCEEEEEECHHH
Q ss_conf             3278873999933155
Q gi|254780270|r  429 RAKRSNPLLLLDEIDK  444 (820)
Q Consensus       429 ~~~~~npv~~ldeidk  444 (820)
T Consensus       218 ~----~~vLiLDDiGa  229 (306)
T PRK08939        218 E----APVLMLDDIGA  229 (306)
T ss_pred             C----CCEEEEECCCC
T ss_conf             4----99899844465