HHsearch alignment for GI: 254780270 and conserved domain: PRK08939
>PRK08939 primosomal protein DnaI; Reviewed.
Probab=98.16 E-value=6e-05 Score=56.31 Aligned_cols=88 Identities=26% Similarity=0.291 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf 99999999998424446735998605656502799999977088249986188888888356320014567128999998
Q gi|254780270|r 349 ERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLK 428 (820)
Q Consensus 349 ~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~ 428 (820)
T Consensus 142 ~~a~~F~~--~y~~~~~~kGlyl~G~~G~GKTyL~~aian~La~~g~~v~~v~~--p~~~~~lK~s~~d~s~~~~i~~~k 217 (306)
T PRK08939 142 MAALDFLE--AYKPGEKVKGLYLYGDFGVGKTYLLAAIANELAKKGVSSTLVHF--PEFIRELKNAISDGSVKEKIDAVK 217 (306)
T ss_pred HHHHHHHH--HHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEH--HHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999999--73769888778898999998999999999999986992999875--999999999864898899999984
Q ss_pred HCCCCCEEEEEECHHH
Q ss_conf 3278873999933155
Q gi|254780270|r 429 RAKRSNPLLLLDEIDK 444 (820)
Q Consensus 429 ~~~~~npv~~ldeidk 444 (820)
T Consensus 218 ~----~~vLiLDDiGa 229 (306)
T PRK08939 218 E----APVLMLDDIGA 229 (306)
T ss_pred C----CCEEEEECCCC
T ss_conf 4----99899844465