HHsearch alignment for GI: 254780270 and conserved domain: PRK09302
>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=95.16 E-value=0.039 Score=34.96 Aligned_cols=47 Identities=28% Similarity=0.277 Sum_probs=34.7
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHH----HHHHCCCEEEEECCCCCCHHHHCCC
Q ss_conf 446735998605656502799999----9770882499861888888883563
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSI----AKATGRQYVRMSLGGVYDEADIRGH 411 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~si----a~al~r~f~~islgg~~d~~~i~gh 411 (820)
T Consensus 21 lp~g~~~LV~G~pGsGKTtla~QfL~~Ga~~~GE~~lyitl~E~--~~~l~~~ 71 (501)
T PRK09302 21 LPKGRPTLVSGTAGTGKTLFALQFLHNGIKSFGEPGVFVTFEES--PEDIIRN 71 (501)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC--HHHHHHH
T ss_conf 88997799983899999999999999998855997899985799--9999999