HHsearch alignment for GI: 254780270 and conserved domain: PRK09435
>PRK09435 arginine/ornithine transport system ATPase; Provisional.
Probab=96.53 E-value=0.0067 Score=40.78 Aligned_cols=145 Identities=17% Similarity=0.292 Sum_probs=73.1
Q ss_pred CCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 32210688998776652011689999999999998424446735998605656502799999977088249986188888
Q gi|254780270|r 325 KTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYD 404 (820)
Q Consensus 325 ~~~~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d 404 (820)
T Consensus 12 g~~~alar~itlvEs~~~~~~~~~~~ll~~l----~~~~g~a~~iGiTG~pG~GKStli~~l~~~~~~~g~~v~vlavDP 87 (325)
T PRK09435 12 GDRAALARAITLVESTRPDHRALAQELLDAL----LPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDP 87 (325)
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----HHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 9998999999998679912489999999986----301798259974279998688999999999996798589999789
Q ss_pred H---------------HHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHH---HCCCCCC
Q ss_conf 8---------------883563200145671289999983278873999933155423117711556655---4060016
Q gi|254780270|r 405 E---------------ADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLE---VLDPAQN 466 (820)
Q Consensus 405 ~---------------~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~alle---vldp~qn 466 (820)
T Consensus 88 sS~~sgGaiLGDr~Rm~~~~~~~~~fiRs~~-------------------------srg~lgg~~~~~~~~~~~~~a--- 139 (325)
T PRK09435 88 SSTRTGGSILGDKTRMERLSRHPNAFIRPSP-------------------------SSGTLGGVARKTRETMLLCEA--- 139 (325)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCEEEEECC-------------------------CCCCCCCCCHHHHHHHHHHHH---
T ss_conf 9998886101038888761479984884067-------------------------788867733549999999997---
Q ss_pred CCEEEEECCCCCCCCCEEEEEECCCC--CCC-HHHCCCEEEEEECCCCHH
Q ss_conf 81332010352364427999934865--544-131172479982587868
Q gi|254780270|r 467 SSFVDHYLEVEYDLSDVMFIMTANTL--NIP-LPLMDRMEIIRIAGYTEE 513 (820)
Q Consensus 467 ~~f~d~y~~~~~dls~v~fi~tan~~--~i~-~~l~drme~i~~~~y~~~ 513 (820)
T Consensus 140 ---------~g~---d~i~iETvGvGQ~e~~v~~~~d~~~~~~~p~~GD~ 177 (325)
T PRK09435 140 ---------AGF---DVILVETVGVGQSETAVAGMVDFFLLLQLPGAGDE 177 (325)
T ss_pred ---------CCC---CEEEEEECCCCHHHHHHHHHCCEEEEEECCCCCCH
T ss_conf ---------799---98999706777148899874266888835887608