HHsearch alignment for GI: 254780270 and conserved domain: PRK10365
>PRK10365 transcriptional regulatory protein ZraR; Provisional.
Probab=98.97 E-value=1.5e-08 Score=83.67 Aligned_cols=202 Identities=17% Similarity=0.336 Sum_probs=129.0
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHC---CCEEEEECCCCCCH---HHHCCCCCC-CCCC---CCHHHHHHHHHCCC
Q ss_conf 44673599860565650279999997708---82499861888888---883563200-1456---71289999983278
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSIAKATG---RQYVRMSLGGVYDE---ADIRGHRRT-YIGS---MPGRIIQSLKRAKR 432 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~sia~al~---r~f~~islgg~~d~---~~i~gh~~t-y~ga---~pg~ii~~l~~~~~ 432 (820)
T Consensus 160 ~s~~pVL-I~GE~GTGK~~~Ar~IH~~S~r~~~pfv~vnC~~l~~~l~eseLFG~~~gaftga~~~~~g~~~~------A 232 (441)
T PRK10365 160 PSEATVL-IHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVE------A 232 (441)
T ss_pred CCCCCEE-EECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEE------C
T ss_conf 8899489-98999810999999999657877898079878989845558986177556878965346898778------8
Q ss_pred CCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEEC--CCCCCCCCEEEEEECC-CC-C-C-----CHHHCCCE
Q ss_conf 873999933155423117711556655406001681332010--3523644279999348-65-5-4-----41311724
Q gi|254780270|r 433 SNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYL--EVEYDLSDVMFIMTAN-TL-N-I-----PLPLMDRM 502 (820)
Q Consensus 433 ~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~--~~~~dls~v~fi~tan-~~-~-i-----~~~l~drm 502 (820)
T Consensus 233 ~gGTLfLdeI~~l~~~~Q~----kLl~~l~---~~~~~~~g~~~~~~~---d~RiIaat~~~l~~~v~~g~Fr~dLy~rL 302 (441)
T PRK10365 233 DGGTLFLDEIGDISPMMQV----RLLRAIQ---EREVQRVGSNQTISV---DVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 (441)
T ss_pred CCCEECCCCCCCCCHHHHH----HHHHHHH---HHHHCCCCCCCEEEC---CCEEEECCCCCHHHHHHCCCCHHHHHHHH
T ss_conf 9982550231529999999----9998777---521000588734413---63799837889999988198258999886
Q ss_pred EE--EEECCCCH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 79--98258786-8999899986089899862578131322899999997317741023478887999989876542117
Q gi|254780270|r 503 EI--IRIAGYTE-EEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKN 579 (820)
Q Consensus 503 e~--i~~~~y~~-~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~ 579 (820)
T Consensus 303 ~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~--~~~~s~~a~~~-L~~y~WPGNvREL~n~iera~~-----~~~~ 374 (441)
T PRK10365 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKA--VKGFTPQAMDL-LIHYDWPGNIRELENAVERAVV-----LLTG 374 (441)
T ss_pred CCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC--CCCCCHHHHHH-HHCCCCCCHHHHHHHHHHHHHH-----HCCC
T ss_conf 01113782600062009999999999999984999--88889999999-9709999899999999999999-----5789
Q ss_pred CCCEECCCHHHHHH
Q ss_conf 85201279678675
Q gi|254780270|r 580 SDTTVSINENNLQD 593 (820)
Q Consensus 580 ~~~~~~i~~~~l~~ 593 (820)
T Consensus 375 ----~~i~~~~l~~ 384 (441)
T PRK10365 375 ----EYISERELPL 384 (441)
T ss_pred ----CCCCHHHCCH
T ss_conf ----8688465754