HHsearch alignment for GI: 254780270 and conserved domain: PRK11331
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional.
Probab=98.91 E-value=5.6e-08 Score=79.21 Aligned_cols=137 Identities=26% Similarity=0.321 Sum_probs=92.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCC--CEEEEECCCC----CCHHHHCCCCCCCCCCC--CHHHHHHHHHCCC---
Q ss_conf 46735998605656502799999977088--2499861888----88888356320014567--1289999983278---
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGR--QYVRMSLGGV----YDEADIRGHRRTYIGSM--PGRIIQSLKRAKR--- 432 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r--~f~~islgg~----~d~~~i~gh~~ty~ga~--pg~ii~~l~~~~~--- 432 (820)
T Consensus 193 tKknv-IL~G~pGtGKT~lAk~lA~~l~g~~~~~rv~~VqfhpsysYEDfi~Gyrp~~~gf~~~~G~f~~~~~~A~~~p~ 271 (459)
T PRK11331 193 IKKNI-ILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPE 271 (459)
T ss_pred CCCCE-EEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCCCEECCCHHHHHHHHHHHCCC
T ss_conf 58827-96589998878999999999707887784689983588661787646056888613268369999999984989
Q ss_pred CCEEEEEECHHHHHHHCCCCHHHH---HHHHCCCCC-C--CCEE-------EEECCCCCCCCCEEEEEECCCCC-----C
Q ss_conf 873999933155423117711556---655406001-6--8133-------20103523644279999348655-----4
Q gi|254780270|r 433 SNPLLLLDEIDKMGSDLRGDPSAA---LLEVLDPAQ-N--SSFV-------DHYLEVEYDLSDVMFIMTANTLN-----I 494 (820)
Q Consensus 433 ~npv~~ldeidk~~~~~~gdp~~a---llevldp~q-n--~~f~-------d~y~~~~~dls~v~fi~tan~~~-----i 494 (820)
T Consensus 272 ~~y~~iidein------r~~~~~~fgel~~liE~dkR~~~~~~~l~ys~~~~~~f~vP---~Nl~iigtmNtadrs~~~~ 342 (459)
T PRK11331 272 KKYVFIIDEIN------RANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVP---ENVYIIGLMNTADRSLAVV 342 (459)
T ss_pred CCEEEEEEHHH------CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEECCC---CCEEEEEECCCCCHHHHHH
T ss_conf 87699984320------33889999999999641256765225630036888533468---8659998503341068878
Q ss_pred CHHHCCCEEEEEECCC
Q ss_conf 4131172479982587
Q gi|254780270|r 495 PLPLMDRMEIIRIAGY 510 (820)
Q Consensus 495 ~~~l~drme~i~~~~y 510 (820)
T Consensus 343 d~alrRrf~f~~~~pd 358 (459)
T PRK11331 343 DYALRRRFSFIDIEPG 358 (459)
T ss_pred HHHHHHHHCCEECCCC
T ss_conf 9999865021215898