HHsearch alignment for GI: 254780270 and conserved domain: PRK13342
>PRK13342 recombination factor protein RarA; Reviewed.
Probab=99.67 E-value=4.7e-15 Score=132.79 Aligned_cols=193 Identities=25% Similarity=0.324 Sum_probs=132.7
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHH-CCCCCEEEEEEC
Q ss_conf 4467359986056565027999999770882499861888888883563200145671289999983-278873999933
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKR-AKRSNPLLLLDE 441 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~-~~~~npv~~lde 441 (820)
T Consensus 34 ~~~~~s~Il~GPPG~GKTTlA~iiA~~~~~~f~~lnA~~-~gv~dir~------------ii~~a~~~~~~~~tilfiDE 100 (417)
T PRK13342 34 AGRLSSMILWGPPGTGKTTLARIIAGATDAEFEALSAVT-SGVKDLRE------------VIEEAKQSRLGRRTILFIDE 100 (417)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHH------------HHHHHHHHHCCCCEEEEEEC
T ss_conf 699975998896999899999999998689889961410-38899999------------99998863148965999978
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEE--ECCCC-CCCHHHCCCEEEEEECCCCHHHHHHH
Q ss_conf 1554231177115566554060016813320103523644279999--34865-54413117247998258786899989
Q gi|254780270|r 442 IDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIM--TANTL-NIPLPLMDRMEIIRIAGYTEEEKLQI 518 (820)
Q Consensus 442 idk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~--tan~~-~i~~~l~drme~i~~~~y~~~ek~~i 518 (820)
T Consensus 101 IHRfnK~QQ----D~LLp~vE~-----------------g~iiLIgATTENP~f~in~aLlSRc~vf~l~~L~~~di~~i 159 (417)
T PRK13342 101 IHRFNKAQQ----DALLPHVED-----------------GTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDLEQL 159 (417)
T ss_pred HHHCCHHHH----HHHHHHHHC-----------------CCEEEEEECCCCCHHHCCHHHHHHHHHEECCCCCHHHHHHH
T ss_conf 200588999----999875112-----------------65699974157922534898985657002058999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCC
Q ss_conf 99860898998625781313228999999973177410234788879999898765421178520127967867530520
Q gi|254780270|r 519 AKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVP 598 (820)
Q Consensus 519 ~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~~ 598 (820)
T Consensus 160 L~ral~----~e~~~-~~~i~i~~~al~~i~~~s~G--DaR~aLN~LE~a--------~~~~~~~~~i~~~~~~~~~~~~ 224 (417)
T PRK13342 160 LKRALE----DERGL-GRKLELDDEALDALARLADG--DARRALNLLELA--------AAAAAGGEVITLELLEEALQRR 224 (417)
T ss_pred HHHHHH----HHHCC-CCCCCCCHHHHHHHHHHCCC--CHHHHHHHHHHH--------HHCCCCCCCCCHHHHHHHHHHC
T ss_conf 999998----77433-78877699999999981498--599999999999--------8525899734899999998441
Q ss_pred CCCCCC
Q ss_conf 003320
Q gi|254780270|r 599 RYKYGK 604 (820)
Q Consensus 599 ~~~~~~ 604 (820)
T Consensus 225 ~~~yDk 230 (417)
T PRK13342 225 AARYDK 230 (417)
T ss_pred CCCCCC
T ss_conf 035777