HHsearch alignment for GI: 254780270 and conserved domain: PRK13765
>PRK13765 ATP-dependent protease Lon; Provisional.
Probab=100.00 E-value=0 Score=382.30 Aligned_cols=352 Identities=28% Similarity=0.418 Sum_probs=257.7
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEE--EE-------E---CCCCC
Q ss_conf 320014567128999998327887399993315542311771155665540600168133--20-------1---03523
Q gi|254780270|r 411 HRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFV--DH-------Y---LEVEY 478 (820)
Q Consensus 411 h~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~--d~-------y---~~~~~ 478 (820)
T Consensus 214 h~Rv~aGAiH----------kA~gGvL~IDei~~L~~~~----q~~Ll~al---q~~k~~I~g~~e~SsgA~v~tepvP~ 276 (637)
T PRK13765 214 HERVEAGAIH----------KAHKGVLFIDEINTLRLES----QQSLLTAM---QEKKYPITGQSERSSGAMVRTEPVPC 276 (637)
T ss_pred EEEECCCHHH----------HCCCCEEEEEHHHHCCHHH----HHHHHHHH---HCCCEECCCCCCCCCCCCCCCCCCCE
T ss_conf 1000266121----------1358569984456479889----99999999---65915323688666776257898661
Q ss_pred CCCCEEEEEECCCC-CCCHHHCCCE----EEEEECCCCHHHHHHHHHHHH--HHHHHHHHCCCCCCCCCCHHHHHHHHHC
Q ss_conf 64427999934865-5441311724----799825878689998999860--8989986257813132289999999731
Q gi|254780270|r 479 DLSDVMFIMTANTL-NIPLPLMDRM----EIIRIAGYTEEEKLQIAKNHL--VKKVLTEHALKQEECCISDGVLLDIIRL 551 (820)
Q Consensus 479 dls~v~fi~tan~~-~i~~~l~drm----e~i~~~~y~~~ek~~i~~~~l--~p~~~~~~~~~~~~~~~~~~~i~~ii~~ 551 (820)
T Consensus 277 Df-~lV~aGn~d~~~~m~palrsri~g~gyev~~~~~m-~dt~enr~k~arfiaqev~~dg~i---Phfdr~AVaeII~e 351 (637)
T PRK13765 277 DF-IMVAAGNLDAIENMHPALRSRIRGYGYEVYMNDTM-EDTPENRKKLVRFVAQEVKRDGKI---PHFDREAVEEIIRE 351 (637)
T ss_pred EE-EEEEECCHHHHHHCCHHHHHHHHCCCEEEEECCCC-CCCHHHHHHHHHHHHHHHHHCCCC---CCCCHHHHHHHHHH
T ss_conf 36-99995372766643998886510477499823567-787889999999999999743888---99998999999999
Q ss_pred CCCCCHHHH---HH-HHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCCCCC---------------CCCHHCCCCCC
Q ss_conf 774102347---88-879999898765421178520127967867530520003---------------32000223365
Q gi|254780270|r 552 FTHEAGVRS---FE-RALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVPRYK---------------YGKIEGEDQVG 612 (820)
Q Consensus 552 Yt~EaGvR~---l~-r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~~~~~---------------~~~~~~~~~~G 612 (820)
T Consensus 352 A~R~AG~k~kLTLrLReL~~LIReAgdiA~~eg--~~~Vta~hV~~A~~~~~~~e~qi~d~~~e~~k~~~l~~~~G~~VG 429 (637)
T PRK13765 352 ARRRAGRKGHLTLKLRDLGGLVRVAGDIARSEG--ADLVTAEHVLEAKKISRSIEQQIADRYIERRKDYELFVTEGSEVG 429 (637)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEE
T ss_conf 997405456630528988749999889999759--996649999999998887999999999876536168853886678
Q ss_pred CCCEEEECC-CCCEEEEEEEEEE----CCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEECCCC
Q ss_conf 000000000-1680799999997----48997244325689999999999999999888629985574207814744888
Q gi|254780270|r 613 IVTGLAWTE-VGGEILTVEGVIM----PGKGEITITGNLKEIMKESILAASSYVRSKATTFGIIPSAFNEINIHVHVPEG 687 (820)
Q Consensus 613 ~v~GLa~t~-~GG~~l~IE~~~~----~g~g~l~lTG~lg~vmkES~~~A~s~~k~~~~~~~~~~~~~~~~diHih~p~G 687 (820)
T Consensus 430 qVNGLAV~G~~~G~~~pI~a~vt~~~~~g~g~vi~tg~lg~Ia~~aV~~vsa~lkk~~~~---~---~~~~~~~I~FeQs 503 (637)
T PRK13765 430 RVNGLAVMGGDSGIVLPIMAEVTPAQSKGEGKIIATGKLKEIAKEAVQNVSAIIKKFTGK---D---ISNYDIHIQFVGT 503 (637)
T ss_pred EEEEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCC---C---CCCCCEEEEEEEC
T ss_conf 986689965888860115789986556888608972410677898887899999998557---8---7666179998305
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCEEEEECCHHHHHHHHHHCCCCEEECCHHHHHHHHHCCHHH
Q ss_conf 84788873068999999999836888756106636850302500065689999999709969980367755077614887
Q gi|254780270|r 688 ATPKDGPSAGIAMATAIVSIMTCIPVYKNVAMTGELTLRGRVLPIGGLKEKLLAALRAGVTKVLIPEENIKDLMDIPENV 767 (820)
Q Consensus 688 a~pKDGPSAGi~i~tal~S~~~~~~v~~~iAmTGEitl~G~VlpiGGi~eK~laA~raGi~~viiP~~N~~d~~~ip~~~ 767 (820)
T Consensus 504 Y~gVeGDSAS~Ae~~AliSAL~~iPi~Q~~AvTGSl~q~G~VqpIGGVneKIEaa~~~G~k~ViIP~sN~~dv~-~~~~~ 582 (637)
T PRK13765 504 YEGVEGDSASVSIATAVISALENIPVDQSVAMTGSLSVRGDVLPVGGVTYKIEAAAEAGIKKVIIPKSNEKDVL-IEKEY 582 (637)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEECCCHHHHHHHHHHCCCCEEEECCCHHHHHH-HHHHH
T ss_conf 78867860789999999998747984244357764236773454367079999999808866872400034343-20765
Q ss_pred HCCCEEEECCCHHHHHHHHHCCCCCC
Q ss_conf 70979998193999888760278876
Q gi|254780270|r 768 KNGLEIIPVSFMGEVLKHALLRMPDP 793 (820)
Q Consensus 768 ~~~l~~~~v~~~~evl~~al~~~~~~ 793 (820)
T Consensus 583 ~~~i~iipv~~i~evl~~al~~~~~~ 608 (637)
T PRK13765 583 EDKIEIIPVSTISEVLEHALVGEPEK 608 (637)
T ss_pred CCCEEEEECCCHHHHHHHHHCCCCHH
T ss_conf 08469997373999999874488017