HHsearch alignment for GI: 254780270 and conserved domain: TIGR00602
>TIGR00602 rad24 checkpoint protein rad24; InterPro: IPR004582 To be effective as a mechanism that preserves genomic integrity, the DNA damage checkpoint must be extremely sensitive in its ability to detect DNA damage. In Saccharomyces cerevisiae the Ddc1/Rad17/Mec3 complex and Rad24 are DNA damage checkpoint components which may promote checkpoint activation by "sensing" DNA damage directly . Rad24 shares sequence homology with RF-c, a protein that recognises DNA template/RNA primer hybrids during DNA replication. The Ddc1 complex has structural homology to proliferating-cell nuclear antigen (PCNA), which clamps onto DNA and confers processivity to DNA polymerases delta and epsilon. Rad24 is postulated to recognise DNA lesions and then recruit the Ddc1 complex to generate checkpoint signals. ; GO: 0006281 DNA repair, 0007049 cell cycle, 0005634 nucleus.
Probab=98.14 E-value=1.2e-05 Score=61.66 Aligned_cols=126 Identities=25% Similarity=0.385 Sum_probs=79.0
Q ss_pred CCCC-CCCCCCCCH---HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 0415-876632210---688998776652011689999999999998424446735998605656502799999977088
Q gi|254780270|r 317 GVPW-DKKSKTKKN---LDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR 392 (820)
Q Consensus 317 ~lPW-~~~t~~~~d---l~~a~~iLd~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r 392 (820)
T Consensus 76 ~e~W~eKykP~~~~~lAvHK~K---------i~~v~~wl~a~--~Le~~~~rGGs~LLi~GPsGCgKsT~~k~LsKelg~ 144 (670)
T TIGR00602 76 NELWVEKYKPETQEELAVHKKK---------IEEVEEWLKAQ--VLESAKKRGGSILLITGPSGCGKSTTIKILSKELGI 144 (670)
T ss_pred CCCCCCCCCCCCHHHHHHHHHH---------HHHHHHHHHHH--CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8744102675424577664777---------99999997520--020456677537884175588447899999888644
Q ss_pred CEE--------------------------EE---ECCCCCCHHHHCCCCCCCCCCCCHHHHHHH-HHCCCCCEEEEEECH
Q ss_conf 249--------------------------98---618888888835632001456712899999-832788739999331
Q gi|254780270|r 393 QYV--------------------------RM---SLGGVYDEADIRGHRRTYIGSMPGRIIQSL-KRAKRSNPLLLLDEI 442 (820)
Q Consensus 393 ~f~--------------------------~i---slgg~~d~~~i~gh~~ty~ga~pg~ii~~l-~~~~~~npv~~ldei 442 (820)
T Consensus 145 ~~~ew~Np~~~~~~~n~~k~~~~~~~~f~~~PY~sq~e~f~efll~a~kY~--------~lQ~lG~~~~~~kk~Il~e~l 216 (670)
T TIGR00602 145 KVQEWLNPVLLKEQKNDEKDTLSLESKFSRFPYLSQIEVFSEFLLRATKYN--------KLQKLGDDLQTDKKLILVEDL 216 (670)
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHH--------HHHHCCCCCCCCCCEEEECCC
T ss_conf 565540787888885124444212540221676314554678764212346--------664214110247545772137
Q ss_pred HHHHHHCCCCHH-HHHHHHCC
Q ss_conf 554231177115-56655406
Q gi|254780270|r 443 DKMGSDLRGDPS-AALLEVLD 462 (820)
Q Consensus 443 dk~~~~~~gdp~-~allevld 462 (820)
T Consensus 217 Phl-n~F~~d~~rr~~~~vlr 236 (670)
T TIGR00602 217 PHL-NKFYRDLDRRALREVLR 236 (670)
T ss_pred CCH-HHHCCCHHHHHHHHHHH
T ss_conf 640-22136612689999999