>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.

Probab=99.19 E-value=1.9e-10 Score=97.87 Aligned_cols=178 Identities=29% Similarity=0.383 Sum_probs=127.2 Q ss_pred HHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCC Q ss_conf 52011689999999999998424446735998605656502799999977088249986188888888356320014567 Q gi|254780270|r 340 DHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSM 419 (820) Q Consensus 340 ~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~ 419 (820) T Consensus 5 eFiGQ~~vk~~L~l~I~AAk~R~e~LD-H~LL~GPPGLGKTTLA~IiA~Emg~~l~iTsGP~L~k--------------- 68 (305) T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKMRQEALD-HLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK--------------- 68 (305) T ss_pred HCCCCHHHHHHHHHHHHHHHHCCCCCC-CEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCC--------------- T ss_conf 105828899999999999982489734-1663175687467899999998389326740675547--------------- Q ss_pred CHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECC-------CCCCCCCEEEE-EECCC Q ss_conf 12899999832788739999331554231177115566554060016813320103-------52364427999-93486 Q gi|254780270|r 420 PGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLE-------VEYDLSDVMFI-MTANT 491 (820) Q Consensus 420 pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~-------~~~dls~v~fi-~tan~ 491 (820) T Consensus 69 PgDlaaiLt~L~~-gDVLFIDEIHRL~p~--------~EE~LYpAMEDF~lDi~IG~Gp~Ar~v~ldLpPFTLvGATTR~ 139 (305) T TIGR00635 69 PGDLAAILTNLEE-GDVLFIDEIHRLSPA--------IEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA 139 (305) T ss_pred HHHHHHHHHHCCC-CCEEECCHHHHCCHH--------HHHHCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCCCC T ss_conf 5789999970568-963101256504833--------4531053001217877871289852576068694420000347 Q ss_pred CCCCHHHCCCEEEEE-ECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC Q ss_conf 554413117247998-2587868999899986089899862578131322899999997317 Q gi|254780270|r 492 LNIPLPLMDRMEIIR-IAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLF 552 (820) Q Consensus 492 ~~i~~~l~drme~i~-~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Y 552 (820) T Consensus 140 G~lt~PLrdRFG~~~rl~fY~~~EL~~Iv~R~A----------~~L~~ei~~~~a~~IArrS 191 (305) T TIGR00635 140 GMLTSPLRDRFGIILRLEFYTPEELAEIVSRSA----------GLLNIEIEQEAALEIARRS 191 (305) T ss_pred CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH----------HHCCCCCCHHHHHHHHHHC T ss_conf 741031334544745402689878999987533----------4414300778999998754

HHsearch alignment for GI: 254780270 and conserved domain: TIGR00635