>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..

Probab=99.68 E-value=6.4e-15 Score=131.81 Aligned_cols=294 Identities=24% Similarity=0.364 Sum_probs=204.5 Q ss_pred HHHHH-HCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH-------------------HHHHHHHHHCCCCCCCCC-C-C Q ss_conf 99985-222478857888889999999875311025789-------------------999987654041587663-2-2 Q gi|254780270|r 270 DFEAR-ISKIRLSKEAREKALSELQKLRQMNPLSAESSV-------------------VRNYLDWLLGVPWDKKSK-T-K 327 (820) Q Consensus 270 el~~K-i~~~~lp~e~~~~~~kEl~rL~~m~~~s~E~~v-------------------~r~Yld~~~~lPW~~~t~-~-~ 327 (820) T Consensus 407 ~LS~ryI~DRfLPDKAIDviDE-aGA~~~l~~~~~~~~~eadekGleetalPev~~~diE~vvak~a~iP~~~~s~ddD~ 485 (774) T TIGR02639 407 ELSARYINDRFLPDKAIDVIDE-AGAAFRLRAKAKKKANEADEKGLEETALPEVNVKDIEEVVAKMAKIPVKTVSSDDDR 485 (774) T ss_pred HHHHHHCCCCCCCCHHHHHHHH-HHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCHHH T ss_conf 9988860257898543228899-999999712027764320112530004787854449999988718994154264479 Q ss_pred CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCC---CCCCC--EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC Q ss_conf 10688998776652011689999999999998424---44673--59986056565027999999770882499861888 Q gi|254780270|r 328 KNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVI---KNKGL--ILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820) Q Consensus 328 ~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~~---~~~g~--il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820) T Consensus 486 ~~L~~L~~~L~~kIfGQD~AI~~lv~--aiK~SrAGl~~~nkP~GSFLF~GPTGVGKTElak~LA~~LGv~l~RFDMSEY 563 (774) T TIGR02639 486 EKLKNLEKELKAKIFGQDEAIEQLVS--AIKRSRAGLGEPNKPVGSFLFVGPTGVGKTELAKQLAEELGVHLLRFDMSEY 563 (774) T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHH--HHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCHHCCCCCHHH T ss_conf 88720447630131515899999999--9999874247788816888864798962578899999970820010465044 Q ss_pred C---CHHHHCCCCCCCCCCCCH-HHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCC Q ss_conf 8---888835632001456712-899999832788739999331554231177115566554060016813320103523 Q gi|254780270|r 403 Y---DEADIRGHRRTYIGSMPG-RIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEY 478 (820) Q Consensus 403 ~---d~~~i~gh~~ty~ga~pg-~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~ 478 (820) T Consensus 564 mEKHTVsRLIGsPPGYVGfEqGGLLT~Avr--K~P~cVLLLDEIEKA----HpDI~NILLQVMD---~AtLTDN~-GrKa 633 (774) T TIGR02639 564 MEKHTVSRLIGSPPGYVGFEQGGLLTDAVR--KHPHCVLLLDEIEKA----HPDIYNILLQVMD---YATLTDNN-GRKA 633 (774) T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHC--CCCCEEEHHHHHHHH----HHHHHHHHHHHHC---CCEEECCC-CCEE T ss_conf 689999874168888513167772122331--288535423466663----1336667876633---54340588-8576 Q ss_pred CCCCEEEEEECCC-C-CCCHHH------------------------CCCE-EEEEECCCCHHHHHHHHHHHHHH--HHHH Q ss_conf 6442799993486-5-544131------------------------1724-79982587868999899986089--8998 Q gi|254780270|r 479 DLSDVMFIMTANT-L-NIPLPL------------------------MDRM-EIIRIAGYTEEEKLQIAKNHLVK--KVLT 529 (820) Q Consensus 479 dls~v~fi~tan~-~-~i~~~l------------------------~drm-e~i~~~~y~~~ek~~i~~~~l~p--~~~~ 529 (820) T Consensus 634 DFRNVILIMTSNaGa~E~~~~~iGF~~~~~~~~~~~Aikk~F~PEFRNRLDaii~F~~L~~~~~~~i~~K~l~el~~~L~ 713 (774) T TIGR02639 634 DFRNVILIMTSNAGAREMSKNPIGFGGERVEDKSEKAIKKLFSPEFRNRLDAIIAFNDLSEEVAEKIVKKFLDELQKQLN 713 (774) T ss_pred EECCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 31136888403700102367764425554123348889731587420133464416998899999999999999997553 Q ss_pred HHCCCCCCCCCCHHHHHHHHHC-CCCCCHHHHHHHHHHHHH-HHHHHHHHCC Q ss_conf 6257813132289999999731-774102347888799998-9876542117 Q gi|254780270|r 530 EHALKQEECCISDGVLLDIIRL-FTHEAGVRSFERALMKIA-RKAVTKIVKN 579 (820) Q Consensus 530 ~~~~~~~~~~~~~~~i~~ii~~-Yt~EaGvR~l~r~i~~i~-r~~~~~~~~~ 579 (820) T Consensus 714 e---K~v~l~l~~~a~~~LA~KGY~~efGARpl~R~I~~~i~~~L~dEILFG 762 (774) T TIGR02639 714 E---KNVELELTDDAIKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEILFG 762 (774) T ss_pred H---CCEEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC T ss_conf 0---653787647899999863678110554489998874125765442057

HHsearch alignment for GI: 254780270 and conserved domain: TIGR02639