HHsearch alignment for GI: 254780270 and conserved domain: TIGR02915
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=97.78 E-value=0.00013 Score=53.76 Aligned_cols=256 Identities=22% Similarity=0.365 Sum_probs=157.5
Q ss_pred CCCHHHHCC--CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 100001012--466550467899985222478857888889999999875311--0257899999876540415876632
Q gi|254780270|r 251 MKAIQKELD--NGEEGRDEISDFEARISKIRLSKEAREKALSELQKLRQMNPL--SAESSVVRNYLDWLLGVPWDKKSKT 326 (820)
Q Consensus 251 LKaIqkELG--e~ed~~~Ei~el~~Ki~~~~lp~e~~~~~~kEl~rL~~m~~~--s~E~~v~r~Yld~~~~lPW~~~t~~ 326 (820)
T Consensus 90 lkAi~--lGAYDFyqKP~d~d~L~liv~RA----f~L~~Le~ENRrL~~~~~~Gst~~~Gli~---------------~- 147 (451)
T TIGR02915 90 LKAIG--LGAYDFYQKPIDPDVLKLIVDRA----FRLYTLETENRRLQSALGGGSTALEGLIT---------------S- 147 (451)
T ss_pred HHHHH--CCCCCCCCCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCCCCCCCCCEEE---------------C-
T ss_conf 99964--37510135787578999999998----88888888769987406887410365220---------------6-
Q ss_pred CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC---CEEEEECCCCC
Q ss_conf 210688998776652011689999999999998424446735998605656502799999977088---24998618888
Q gi|254780270|r 327 KKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR---QYVRMSLGGVY 403 (820)
Q Consensus 327 ~~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r---~f~~islgg~~ 403 (820)
T Consensus 148 --------------~~~m~kic~t------IekvA~sd-~Tvl-lLGESGTGKEV~ArA~H~~S~R~~~~FVAINCAAIP 205 (451)
T TIGR02915 148 --------------SPGMQKICRT------IEKVAPSD-ITVL-LLGESGTGKEVLARALHELSDRKDKRFVAINCAAIP 205 (451)
T ss_pred --------------CCCHHHHHHH------HHHHCCCC-CEEE-EECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCC
T ss_conf --------------8506789888------65212000-0130-104667117899989842057897773444167457
Q ss_pred C---HHHHCCCCCCCCCCCCHHHHHHHHHCCCC-CEEEEEECHHHHHHHCCCCHHHHHHHHC------------------
Q ss_conf 8---88835632001456712899999832788-7399993315542311771155665540------------------
Q gi|254780270|r 404 D---EADIRGHRRTYIGSMPGRIIQSLKRAKRS-NPLLLLDEIDKMGSDLRGDPSAALLEVL------------------ 461 (820)
Q Consensus 404 d---~~~i~gh~~ty~ga~pg~ii~~l~~~~~~-npv~~ldeidk~~~~~~gdp~~allevl------------------ 461 (820)
T Consensus 206 EnLLEsELFGyEK---GAFTGA~k~T~GKIE~A~~GTLFLDEIGDLP~~L----QAKLLRFLQErVIER~GGR~eIPVDV 278 (451)
T TIGR02915 206 ENLLESELFGYEK---GAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNL----QAKLLRFLQERVIERLGGREEIPVDV 278 (451)
T ss_pred CHHHHHHHHCCCC---HHHHHHHCCCCCCEEEECCCCCCCCCHHCCCHHH----HHHHHHHHHHHHHHCCCCCCCCCCCE
T ss_conf 5246677603410---1242200347761675068830111122067668----99999875466631058872456142
Q ss_pred ----CCCCC-------CCEE-EEECCCCCCCCCEEEEEECCCCCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf ----60016-------8133-20103523644279999348655441311724799825878689998999860898998
Q gi|254780270|r 462 ----DPAQN-------SSFV-DHYLEVEYDLSDVMFIMTANTLNIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLT 529 (820)
Q Consensus 462 ----dp~qn-------~~f~-d~y~~~~~dls~v~fi~tan~~~i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~ 529 (820)
T Consensus 279 RvvCATnqdL~~~i~eg~FREDLf----YRl~Ei-------si~i-PPLR~R~----------gDa~lLA~~F-l~rf~~ 335 (451)
T TIGR02915 279 RVVCATNQDLKKMIAEGTFREDLF----YRLAEI-------SITI-PPLRDRD----------GDAVLLANAF-LERFAR 335 (451)
T ss_pred EEEECCCHHHHHHHHCCCCCCCCE----EEEEEE-------EEEC-CCCCCCH----------HHHHHHHHHH-HHHHHH
T ss_conf 675032246899985489720001----346667-------8625-8899860----------1899999999-998878
Q ss_pred HHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHH
Q ss_conf 625781313228999999973177410234788879999898765421178520127967867
Q gi|254780270|r 530 EHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQ 592 (820)
Q Consensus 530 ~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~ 592 (820)
T Consensus 336 ~--~k~~~~~F~~DA~~a-le~h~WPGNvRELEN~v-----KRAVIMa~g~----qIt~~DLG 386 (451)
T TIGR02915 336 E--LKRKAKGFTDDALRA-LEAHKWPGNVRELENKV-----KRAVIMAEGN----QITAEDLG 386 (451)
T ss_pred H--HCCCCCCHHHHHHHH-HHCCCCCCCHHHHHCHH-----HEEEEECCCC----CCCHHHCC
T ss_conf 7--330216606999999-76069988415440300-----2134533787----13565488