HHsearch alignment for GI: 254780270 and conserved domain: TIGR03015
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.40 E-value=0.00011 Score=54.25 Aligned_cols=199 Identities=17% Similarity=0.248 Sum_probs=112.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCC---EEEEECCCCCCHHH-HC------CCCCCCC--CCCCHHHHHHHHH--C
Q ss_conf 67359986056565027999999770882---49986188888888-35------6320014--5671289999983--2
Q gi|254780270|r 365 KGLILCFVGPPGVGKTSLAQSIAKATGRQ---YVRMSLGGVYDEAD-IR------GHRRTYI--GSMPGRIIQSLKR--A 430 (820)
Q Consensus 365 ~g~il~l~gppgvGKts~~~sia~al~r~---f~~islgg~~d~~~-i~------gh~~ty~--ga~pg~ii~~l~~--~ 430 (820)
T Consensus 42 ~~g~~lltGe~GtGKTtllr~l~~~l~~~~~~~~~i~~~~l~-~~~ll~~i~~~lg~~~~~~~~~~~~~~l~~~L~~~~~ 120 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVD-AEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFA 120 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCC-HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 896599972998988999999998459345489997699999-9999999999859898898999999999999999996
Q ss_pred CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEE--EECCCC----C--CCHHHCCCE
Q ss_conf 78873999933155423117711556655406001681332010352364427999--934865----5--441311724
Q gi|254780270|r 431 KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFI--MTANTL----N--IPLPLMDRM 502 (820)
Q Consensus 431 ~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi--~tan~~----~--i~~~l~drm 502 (820)
T Consensus 121 ~g~~~vliIDEAq~L~~~--------~Le~Lr~---------L~n~e~~~~~ll~iiL~GqpeL~~~L~~~~~~~l~qRI 183 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPE--------LLEELRM---------LSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRI 183 (269)
T ss_pred CCCCEEEEEECHHHCCHH--------HHHHHHH---------HHCCCCCCCCCEEEEEECCHHHHHHHCCCCHHHHHHCE
T ss_conf 699469997242219999--------9999999---------97013588870489995786799987274025455507
Q ss_pred E-EEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 7-998258786899989998608989986257813132289999999731774102347888799998987654211785
Q gi|254780270|r 503 E-IIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSD 581 (820)
Q Consensus 503 e-~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~ 581 (820)
T Consensus 184 ~~~~~L~pl~~eet~----~YI~~R-L~~AG~~~-~~~Ft~~A~~~-I~~~S~-----G~PR~IN~Lc~~aLl~a~~~~~ 251 (269)
T TIGR03015 184 IASCHLGPLDREETR----EYIEHR-LERAGNRD-APVFSEGAFDA-IHRFSR-----GIPRLINILCDRLLLSAFLEEK 251 (269)
T ss_pred EEEEEECCCCHHHHH----HHHHHH-HHHCCCCC-CCCCCHHHHHH-HHHHCC-----CCHHHHHHHHHHHHHHHHHHCC
T ss_conf 679984799989999----999999-98669999-99859999999-999869-----9008999999999999999488
Q ss_pred CEECCCHHHHHHHH
Q ss_conf 20127967867530
Q gi|254780270|r 582 TTVSINENNLQDYL 595 (820)
Q Consensus 582 ~~~~i~~~~l~~~l 595 (820)
T Consensus 252 --~~I~~~~v~~~~ 263 (269)
T TIGR03015 252 --REIGGEEVREVI 263 (269)
T ss_pred --CCCCHHHHHHHH
T ss_conf --867999999999