HHsearch alignment for GI: 254780270 and conserved domain: TIGR03345
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.88 E-value=7e-19 Score=161.78 Aligned_cols=434 Identities=18% Similarity=0.257 Sum_probs=253.9
Q ss_pred EECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC--------CCHHH---HHHHHHHH
Q ss_conf 70798199999980488888478999999999999999985455777888764126--------88678---99998852
Q gi|254780270|r 121 IEREDFLEAITQVLPDPTEDPVELEALSRSVIAEFSNYIKLNKKISPEVIGITSQI--------EGFSK---LADVIAAN 189 (820)
Q Consensus 121 ~~~~pyl~A~Ve~l~d~~~d~~eleAL~~~L~e~f~eli~l~~~i~~E~~~~l~~i--------ddp~~---LAD~IAs~ 189 (820)
T Consensus 332 iEkD~AL~RRFq~V~V~EPs~eeti~IL~glk~~yE~hH~--V~i~d~Ai~aAv~LS~RYI~dR~LPDKAIDLlDeA~A~ 409 (852)
T TIGR03345 332 FEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHG--VLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACAR 409 (852)
T ss_pred HHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC--EEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 6426889962475527999879999999987999855479--68708999999999872155455842789999999999
Q ss_pred CCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--------HHHHHHHH---HHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 358989999987432-479999999999998655--------66677775---433332223321122101111000010
Q gi|254780270|r 190 LSIKVAERQKILEAV-SVKERLEMLLVFMESEIS--------VLQVEKRI---RSRVKRQMEKTQREYYLHEQMKAIQKE 257 (820)
Q Consensus 190 L~l~~eeKQeLLE~~-Di~eRLe~Ll~lL~~EiE--------ilkLq~eI---~~kVk~kidk~QREyyLREQLKaIqkE 257 (820)
T Consensus 410 ~~~~~~~~p~~l~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 489 (852)
T TIGR03345 410 VALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKELVEAILALRAE 489 (852)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99860489568999999999999999998744522733299999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHCCCCCCCCCCCC-HHHHH
Q ss_conf 12466550467899985222478857888889999999875311025---789999987654041587663221-06889
Q gi|254780270|r 258 LDNGEEGRDEISDFEARISKIRLSKEAREKALSELQKLRQMNPLSAE---SSVVRNYLDWLLGVPWDKKSKTKK-NLDFA 333 (820)
Q Consensus 258 LGe~ed~~~Ei~el~~Ki~~~~lp~e~~~~~~kEl~rL~~m~~~s~E---~~v~r~Yld~~~~lPW~~~t~~~~-dl~~a 333 (820)
T Consensus 490 ~~~~~~~~~~~~~~---------~~~~l~~~~~~l~~~~~~~~~~~~~V~~~~ia~vvs~~tgIPv~~l~~~e~~~l~~l 560 (852)
T TIGR03345 490 LEADADAPADDDAA---------LRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPVGRMVRDEIEAVLSL 560 (852)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99866514334577---------888999999999974045664435568999999999996898788617888888867
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHH-CCCCCCCE--EEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCCCC---
Q ss_conf 987766520116899999999999984-24446735--9986056565027999999770---88249986188888---
Q gi|254780270|r 334 IRILDQDHFGLEKVKERIIEYLAVQMR-VIKNKGLI--LCFVGPPGVGKTSLAQSIAKAT---GRQYVRMSLGGVYD--- 404 (820)
Q Consensus 334 ~~iLd~~hyGl~~vK~rile~lav~~~-~~~~~g~i--l~l~gppgvGKts~~~sia~al---~r~f~~islgg~~d--- 404 (820)
T Consensus 561 e~~L~~~ViGQ~~Av~~v~~ai~~sraGl~d~~rPigsFLFlGPTGVGKTElAK~LA~~LFg~e~~liR~DMSEy~E~hs 640 (852)
T TIGR03345 561 PDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHT 640 (852)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCHHHCCHHH
T ss_conf 99999997284999999999999987179999998568998789987789999999999719861147842243210436
Q ss_pred HHHHCCCCCCCCCCCCH-HHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCE
Q ss_conf 88835632001456712-89999983278873999933155423117711556655406001681332010352364427
Q gi|254780270|r 405 EADIRGHRRTYIGSMPG-RIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDV 483 (820)
Q Consensus 405 ~~~i~gh~~ty~ga~pg-~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v 483 (820)
T Consensus 641 vsrLiGaPPGYVGy~eGG~LTe~Vrr--~PysVvLfDEIEKAH----pdV~nilLQvlD---~G~LtD~~-Gr~vdF~Nt 710 (852)
T TIGR03345 641 VSRLKGSPPGYVGYGEGGVLTEAVRR--KPYSVVLLDEVEKAH----PDVLELFYQVFD---KGVMEDGE-GREIDFKNT 710 (852)
T ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHH--CCCEEEEECHHHHCC----HHHHHHHHHHHC---CCEEECCC-CCEEECEEE
T ss_conf 87863899976674877721098880--998688861130028----899999998724---67775799-998845212
Q ss_pred EEEEECCCC-----------------------------C-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHH--HHHH-H
Q ss_conf 999934865-----------------------------5-44131172479982587868999899986089--8998-6
Q gi|254780270|r 484 MFIMTANTL-----------------------------N-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVK--KVLT-E 530 (820)
Q Consensus 484 ~fi~tan~~-----------------------------~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p--~~~~-~ 530 (820)
T Consensus 711 IIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFlnRi~ii~F~~L~~~~l~~Iv~~~l~~l~~rL~~~ 790 (852)
T TIGR03345 711 VILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKEN 790 (852)
T ss_pred EEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99975724479998640376555668999999999998347988864566897368999999999999999999999862
Q ss_pred HCCCCCCCCCCHHHHHHHHH-CCCCCCHHHHHHHHHHHHH-HHHHHHHHC
Q ss_conf 25781313228999999973-1774102347888799998-987654211
Q gi|254780270|r 531 HALKQEECCISDGVLLDIIR-LFTHEAGVRSFERALMKIA-RKAVTKIVK 578 (820)
Q Consensus 531 ~~~~~~~~~~~~~~i~~ii~-~Yt~EaGvR~l~r~i~~i~-r~~~~~~~~ 578 (820)
T Consensus 791 ~~i---~l~~~~~~~~~l~~~g~~~~~GARpl~r~I~~~i~~~la~~iL~ 837 (852)
T TIGR03345 791 HGA---ELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQILE 837 (852)
T ss_pred CCC---EEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 896---89988999999998289977686438999999988999999999