HHsearch alignment for GI: 254780270 and conserved domain: TIGR03345

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.88  E-value=7e-19  Score=161.78  Aligned_cols=434  Identities=18%  Similarity=0.257  Sum_probs=253.9

Q ss_pred             EECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC--------CCHHH---HHHHHHHH
Q ss_conf             70798199999980488888478999999999999999985455777888764126--------88678---99998852
Q gi|254780270|r  121 IEREDFLEAITQVLPDPTEDPVELEALSRSVIAEFSNYIKLNKKISPEVIGITSQI--------EGFSK---LADVIAAN  189 (820)
Q Consensus       121 ~~~~pyl~A~Ve~l~d~~~d~~eleAL~~~L~e~f~eli~l~~~i~~E~~~~l~~i--------ddp~~---LAD~IAs~  189 (820)
T Consensus       332 iEkD~AL~RRFq~V~V~EPs~eeti~IL~glk~~yE~hH~--V~i~d~Ai~aAv~LS~RYI~dR~LPDKAIDLlDeA~A~  409 (852)
T TIGR03345       332 FEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHG--VLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACAR  409 (852)
T ss_pred             HHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC--EEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             6426889962475527999879999999987999855479--68708999999999872155455842789999999999


Q ss_pred             CCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--------HHHHHHHH---HHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             358989999987432-479999999999998655--------66677775---433332223321122101111000010
Q gi|254780270|r  190 LSIKVAERQKILEAV-SVKERLEMLLVFMESEIS--------VLQVEKRI---RSRVKRQMEKTQREYYLHEQMKAIQKE  257 (820)
Q Consensus       190 L~l~~eeKQeLLE~~-Di~eRLe~Ll~lL~~EiE--------ilkLq~eI---~~kVk~kidk~QREyyLREQLKaIqkE  257 (820)
T Consensus       410 ~~~~~~~~p~~l~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  489 (852)
T TIGR03345       410 VALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKELVEAILALRAE  489 (852)
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99860489568999999999999999998744522733299999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHCCCCCCCCCCCC-HHHHH
Q ss_conf             12466550467899985222478857888889999999875311025---789999987654041587663221-06889
Q gi|254780270|r  258 LDNGEEGRDEISDFEARISKIRLSKEAREKALSELQKLRQMNPLSAE---SSVVRNYLDWLLGVPWDKKSKTKK-NLDFA  333 (820)
Q Consensus       258 LGe~ed~~~Ei~el~~Ki~~~~lp~e~~~~~~kEl~rL~~m~~~s~E---~~v~r~Yld~~~~lPW~~~t~~~~-dl~~a  333 (820)
T Consensus       490 ~~~~~~~~~~~~~~---------~~~~l~~~~~~l~~~~~~~~~~~~~V~~~~ia~vvs~~tgIPv~~l~~~e~~~l~~l  560 (852)
T TIGR03345       490 LEADADAPADDDAA---------LRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPVGRMVRDEIEAVLSL  560 (852)
T ss_pred             HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             99866514334577---------888999999999974045664435568999999999996898788617888888867


Q ss_pred             HHHHHHHHHCHHHHHHHHHHHHHHHHH-CCCCCCCE--EEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCCCC---
Q ss_conf             987766520116899999999999984-24446735--9986056565027999999770---88249986188888---
Q gi|254780270|r  334 IRILDQDHFGLEKVKERIIEYLAVQMR-VIKNKGLI--LCFVGPPGVGKTSLAQSIAKAT---GRQYVRMSLGGVYD---  404 (820)
Q Consensus       334 ~~iLd~~hyGl~~vK~rile~lav~~~-~~~~~g~i--l~l~gppgvGKts~~~sia~al---~r~f~~islgg~~d---  404 (820)
T Consensus       561 e~~L~~~ViGQ~~Av~~v~~ai~~sraGl~d~~rPigsFLFlGPTGVGKTElAK~LA~~LFg~e~~liR~DMSEy~E~hs  640 (852)
T TIGR03345       561 PDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHT  640 (852)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCHHHCCHHH
T ss_conf             99999997284999999999999987179999998568998789987789999999999719861147842243210436


Q ss_pred             HHHHCCCCCCCCCCCCH-HHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCE
Q ss_conf             88835632001456712-89999983278873999933155423117711556655406001681332010352364427
Q gi|254780270|r  405 EADIRGHRRTYIGSMPG-RIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDV  483 (820)
Q Consensus       405 ~~~i~gh~~ty~ga~pg-~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v  483 (820)
T Consensus       641 vsrLiGaPPGYVGy~eGG~LTe~Vrr--~PysVvLfDEIEKAH----pdV~nilLQvlD---~G~LtD~~-Gr~vdF~Nt  710 (852)
T TIGR03345       641 VSRLKGSPPGYVGYGEGGVLTEAVRR--KPYSVVLLDEVEKAH----PDVLELFYQVFD---KGVMEDGE-GREIDFKNT  710 (852)
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHH--CCCEEEEECHHHHCC----HHHHHHHHHHHC---CCEEECCC-CCEEECEEE
T ss_conf             87863899976674877721098880--998688861130028----899999998724---67775799-998845212


Q ss_pred             EEEEECCCC-----------------------------C-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHH--HHHH-H
Q ss_conf             999934865-----------------------------5-44131172479982587868999899986089--8998-6
Q gi|254780270|r  484 MFIMTANTL-----------------------------N-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVK--KVLT-E  530 (820)
Q Consensus       484 ~fi~tan~~-----------------------------~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p--~~~~-~  530 (820)
T Consensus       711 IIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFlnRi~ii~F~~L~~~~l~~Iv~~~l~~l~~rL~~~  790 (852)
T TIGR03345       711 VILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKEN  790 (852)
T ss_pred             EEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99975724479998640376555668999999999998347988864566897368999999999999999999999862


Q ss_pred             HCCCCCCCCCCHHHHHHHHH-CCCCCCHHHHHHHHHHHHH-HHHHHHHHC
Q ss_conf             25781313228999999973-1774102347888799998-987654211
Q gi|254780270|r  531 HALKQEECCISDGVLLDIIR-LFTHEAGVRSFERALMKIA-RKAVTKIVK  578 (820)
Q Consensus       531 ~~~~~~~~~~~~~~i~~ii~-~Yt~EaGvR~l~r~i~~i~-r~~~~~~~~  578 (820)
T Consensus       791 ~~i---~l~~~~~~~~~l~~~g~~~~~GARpl~r~I~~~i~~~la~~iL~  837 (852)
T TIGR03345       791 HGA---ELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQILE  837 (852)
T ss_pred             CCC---EEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             896---89988999999998289977686438999999988999999999