HHsearch alignment for GI: 254780270 and conserved domain: TIGR03345
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.24 E-value=2.1e-05 Score=59.79 Aligned_cols=179 Identities=20% Similarity=0.350 Sum_probs=111.3
Q ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH----------CCCEEEEECCCCCCH
Q ss_conf 7766520116899999999999984244467359986056565027999999770----------882499861888888
Q gi|254780270|r 336 ILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKAT----------GRQYVRMSLGGVYDE 405 (820)
Q Consensus 336 iLd~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al----------~r~f~~islgg~~d~ 405 (820)
T Consensus 185 klD-PvIGRd~EI~r~iqIL~Rr~KNN----P--iLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDlg~LvAG 257 (852)
T TIGR03345 185 KID-PVLGRDDEIRQMIDILLRRRQNN----P--ILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAG 257 (852)
T ss_pred CCC-CCCCCHHHHHHHHHHHHHHCCCC----C--EEECCCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEEEEHHHHHHC
T ss_conf 999-88694999999999998624799----7--4657999879999999999997699986774385678678888640
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHC-CCCCEE-EEEECHHHH-HH--HCC-CCHHHHHHHHCCCCCC-CCEEEEECCCCC
Q ss_conf 8835632001456712899999832-788739-999331554-23--117-7115566554060016-813320103523
Q gi|254780270|r 406 ADIRGHRRTYIGSMPGRIIQSLKRA-KRSNPL-LLLDEIDKM-GS--DLR-GDPSAALLEVLDPAQN-SSFVDHYLEVEY 478 (820)
Q Consensus 406 ~~i~gh~~ty~ga~pg~ii~~l~~~-~~~npv-~~ldeidk~-~~--~~~-gdp~~allevldp~qn-~~f~d~y~~~~~ 478 (820)
T Consensus 258 t-------kyRGeFEeRlk~ii~ei~~~~~~iILFIDEiHtlvGAG~~~G~~DaaNi----LKPaLarGel--------- 317 (852)
T TIGR03345 258 A-------SVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANL----LKPALARGEL--------- 317 (852)
T ss_pred C-------CCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCCCCCCHHHH----HHHHHHCCCC---------
T ss_conf 3-------5763599999999999984899769996348775289988886227887----5178737873---------
Q ss_pred CCCCEEEEEECCC----CCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 6442799993486----55441311724799825878689998999860898998625781313228999999973
Q gi|254780270|r 479 DLSDVMFIMTANT----LNIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIR 550 (820)
Q Consensus 479 dls~v~fi~tan~----~~i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~ 550 (820)
T Consensus 318 ---r~IGATT~~EYrk~iEkD~AL~RRFq~V~V~EPs~eeti~IL~g-lk~~yE~hH-----~V~i~d~Ai~aAv~ 384 (852)
T TIGR03345 318 ---RTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRG-LAPVLEKHH-----GVLILDEAVVAAVE 384 (852)
T ss_pred ---EEEEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHH-HHHHHHHCC-----CEEEEHHHHHHHHH
T ss_conf ---49983578999888642688996247552799987999999998-799985547-----96870899999999