HHsearch alignment for GI: 254780270 and conserved domain: TIGR03346
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.36 E-value=1.2e-05 Score=61.46 Aligned_cols=180 Identities=22% Similarity=0.387 Sum_probs=112.7
Q ss_pred HHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH----------CCCEEEEECCCCCCHHHHC
Q ss_conf 520116899999999999984244467359986056565027999999770----------8824998618888888835
Q gi|254780270|r 340 DHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKAT----------GRQYVRMSLGGVYDEADIR 409 (820)
Q Consensus 340 ~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al----------~r~f~~islgg~~d~~~i~ 409 (820)
T Consensus 174 pviGRd~Ei~r~i~IL~Rr~-KNN---p--iLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~LDlg~LvAGt--- 244 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRT-KNN---P--VLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGA--- 244 (852)
T ss_pred CCCCCHHHHHHHHHHHHHHC-CCC---C--CEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEHHHHHCCC---
T ss_conf 77383699999999998732-489---7--21279998799999999999866999978851851275288775215---
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCC-C-CEEEEEECHHHH-HHHC-CC--CHHHHHHHHCCCCCCCCEEEEECCCCCCCCCE
Q ss_conf 63200145671289999983278-8-739999331554-2311-77--11556655406001681332010352364427
Q gi|254780270|r 410 GHRRTYIGSMPGRIIQSLKRAKR-S-NPLLLLDEIDKM-GSDL-RG--DPSAALLEVLDPAQNSSFVDHYLEVEYDLSDV 483 (820)
Q Consensus 410 gh~~ty~ga~pg~ii~~l~~~~~-~-npv~~ldeidk~-~~~~-~g--dp~~allevldp~qn~~f~d~y~~~~~dls~v 483 (820)
T Consensus 245 ----kyRGeFEeRlk~ii~ev~~~~~~iILFIDEiHtliGaG~~~G~~DAaN----lLKPaLarG--------el---r~ 305 (852)
T TIGR03346 245 ----KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGN----MLKPALARG--------EL---HC 305 (852)
T ss_pred ----CCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCCCHHH----HHHHHHHCC--------CC---EE
T ss_conf ----300789999999999998589987999612555326887666410677----743787479--------85---59
Q ss_pred EEEEECCC----CCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 99993486----55441311724799825878689998999860898998625781313228999999973177
Q gi|254780270|r 484 MFIMTANT----LNIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFT 553 (820)
Q Consensus 484 ~fi~tan~----~~i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt 553 (820)
T Consensus 306 IgATT~~EYrk~iEkD~AL~RRFq~I~V~EPs~e~t~~IL~g-l~~~yE~hH-----~V~i~d~Ai~aav~LS~ 373 (852)
T TIGR03346 306 IGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRG-LKERYEVHH-----GVRITDPAIVAAATLSH 373 (852)
T ss_pred EEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHH-HHHHHHHCC-----CCEECHHHHHHHHHHHC
T ss_conf 982789999988322688997377120479986899999997-699997627-----92673999999999713