HHsearch alignment for GI: 254780270 and conserved domain: cd00009
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.43 E-value=1.2e-12 Score=114.72 Aligned_cols=132 Identities=25% Similarity=0.335 Sum_probs=90.6
Q ss_pred HHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 984244467359986056565027999999770---88249986188888888356320014567128999998327887
Q gi|254780270|r 358 QMRVIKNKGLILCFVGPPGVGKTSLAQSIAKAT---GRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSN 434 (820)
Q Consensus 358 ~~~~~~~~g~il~l~gppgvGKts~~~sia~al---~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~n 434 (820)
T Consensus 11 ~~~~~~~~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 85 (151)
T cd00009 11 REALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF-----LVRLLFELAEKAKP 85 (151)
T ss_pred HHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHHHHHHHHHH-----HHHHHHHHHHHCCC
T ss_conf 9998187998089989999886599999999712137982785477704677775760577-----88989999997699
Q ss_pred EEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC---CCCHHHCCCEE-EEEE
Q ss_conf 3999933155423117711556655406001681332010352364427999934865---54413117247-9982
Q gi|254780270|r 435 PLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL---NIPLPLMDRME-IIRI 507 (820)
Q Consensus 435 pv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~---~i~~~l~drme-~i~~ 507 (820)
T Consensus 86 ~vl~iDEi~~l~~~~~----~~~~~~l~~~~~~---------~~~~~~~~vI~~tn~~~~~~~~~~~~~R~~~~i~~ 149 (151)
T cd00009 86 GVLFIDEIDSLSRGAQ----NALLRVLETLNDL---------RIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVI 149 (151)
T ss_pred CEEEEECHHHCCHHHH----HHHHHHHHHHCCC---------CCCCCCEEEEEEECCCCCCCHHHHHHCCCCEEEEC
T ss_conf 8698201665599999----9999999871575---------40678889999528998868377642559869863