HHsearch alignment for GI: 254780270 and conserved domain: cd00984
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.01 E-value=0.043 Score=34.67 Aligned_cols=40 Identities=30% Similarity=0.404 Sum_probs=32.3
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHH--H--HCCCEEEEECC
Q ss_conf 2444673599860565650279999997--7--08824998618
Q gi|254780270|r 361 VIKNKGLILCFVGPPGVGKTSLAQSIAK--A--TGRQYVRMSLG 400 (820)
Q Consensus 361 ~~~~~g~il~l~gppgvGKts~~~sia~--a--l~r~f~~islg 400 (820)
T Consensus 8 gG~~~G~L~vi~a~~g~GKS~~~~~la~~~a~~~g~~V~~~SlE 51 (242)
T cd00984 8 GGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 69999818999968999999999999999999779959999333