HHsearch alignment for GI: 254780270 and conserved domain: cd01123

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

Probab=94.98  E-value=0.019  Score=37.41  Aligned_cols=31  Identities=29%  Similarity=0.337  Sum_probs=25.4

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             4467359986056565027999999770882
Q gi|254780270|r  363 KNKGLILCFVGPPGVGKTSLAQSIAKATGRQ  393 (820)
Q Consensus       363 ~~~g~il~l~gppgvGKts~~~sia~al~r~  393 (820)
T Consensus        16 i~~G~itEi~G~~GsGKTql~lqla~~~~~~   46 (235)
T cd01123          16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLP   46 (235)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf             6478799999999984999999999998424