HHsearch alignment for GI: 254780270 and conserved domain: cd03114

>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.48  E-value=0.0083  Score=40.07  Aligned_cols=122  Identities=20%  Similarity=0.334  Sum_probs=57.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHH-HHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHH
Q ss_conf             599860565650279999997708824998618888888-8356320014567128999998327887399993315542
Q gi|254780270|r  368 ILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEA-DIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMG  446 (820)
Q Consensus       368 il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~-~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~  446 (820)
T Consensus         1 viGitG~pGaGKStLi~~l~~~~~~~g~~VaVlav-DPsS~~s------gGalLGDRiRm~~~~~~--~~vfiRs~--at   69 (148)
T cd03114           1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAI-DPSSPFS------GGAILGDRIRMERHASD--PGVFIRSL--AT   69 (148)
T ss_pred             CEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEE-CCCCCCC------CCCCHHHHHHHHHHCCC--CCEEEEEC--CC
T ss_conf             97625899787899999999999978983799996-8887866------86203235453441579--98368634--66


Q ss_pred             HHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC--CCC-HHHCCCEEEEEECCCCH
Q ss_conf             3117711556655406001681332010352364427999934865--544-13117247998258786
Q gi|254780270|r  447 SDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL--NIP-LPLMDRMEIIRIAGYTE  512 (820)
Q Consensus       447 ~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~--~i~-~~l~drme~i~~~~y~~  512 (820)
T Consensus        70 rg~~ggla~~~~~~i~~l~~---------~g~---D~IiIETvGvGQse~~i~~~aD~~i~v~~p~~GD  126 (148)
T cd03114          70 RGFLGGLSRATPEVIRVLDA---------AGF---DVIIVETVGVGQSEVDIASMADTTVVVMAPGAGD  126 (148)
T ss_pred             CCCCCCHHHHHHHHHHHHHH---------CCC---CEEEEECCCCCCCHHHHHHHCCEEEEEECCCCCC
T ss_conf             66542046889999999997---------599---9899974877756026554356699996368873