HHsearch alignment for GI: 254780270 and conserved domain: cd03114
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.48 E-value=0.0083 Score=40.07 Aligned_cols=122 Identities=20% Similarity=0.334 Sum_probs=57.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHH-HHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHH
Q ss_conf 599860565650279999997708824998618888888-8356320014567128999998327887399993315542
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEA-DIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMG 446 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~-~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~ 446 (820)
T Consensus 1 viGitG~pGaGKStLi~~l~~~~~~~g~~VaVlav-DPsS~~s------gGalLGDRiRm~~~~~~--~~vfiRs~--at 69 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAI-DPSSPFS------GGAILGDRIRMERHASD--PGVFIRSL--AT 69 (148)
T ss_pred CEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEE-CCCCCCC------CCCCHHHHHHHHHHCCC--CCEEEEEC--CC
T ss_conf 97625899787899999999999978983799996-8887866------86203235453441579--98368634--66
Q ss_pred HHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC--CCC-HHHCCCEEEEEECCCCH
Q ss_conf 3117711556655406001681332010352364427999934865--544-13117247998258786
Q gi|254780270|r 447 SDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL--NIP-LPLMDRMEIIRIAGYTE 512 (820)
Q Consensus 447 ~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~--~i~-~~l~drme~i~~~~y~~ 512 (820)
T Consensus 70 rg~~ggla~~~~~~i~~l~~---------~g~---D~IiIETvGvGQse~~i~~~aD~~i~v~~p~~GD 126 (148)
T cd03114 70 RGFLGGLSRATPEVIRVLDA---------AGF---DVIIVETVGVGQSEVDIASMADTTVVVMAPGAGD 126 (148)
T ss_pred CCCCCCHHHHHHHHHHHHHH---------CCC---CEEEEECCCCCCCHHHHHHHCCEEEEEECCCCCC
T ss_conf 66542046889999999997---------599---9899974877756026554356699996368873