HHsearch alignment for GI: 254780270 and conserved domain: cd03115

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.97  E-value=0.0058  Score=41.25  Aligned_cols=24  Identities=38%  Similarity=0.515  Sum_probs=18.0

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             359986056565027999999770
Q gi|254780270|r  367 LILCFVGPPGVGKTSLAQSIAKAT  390 (820)
Q Consensus       367 ~il~l~gppgvGKts~~~sia~al  390 (820)
T Consensus         1 ~Vi~lvGptGvGKTTTiaKLA~~~   24 (173)
T cd03115           1 TVILLVGLQGVGKTTTAAKLALYL   24 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             999998999998899999999999