HHsearch alignment for GI: 254780270 and conserved domain: cd03115
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.97 E-value=0.0058 Score=41.25 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=18.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 359986056565027999999770
Q gi|254780270|r 367 LILCFVGPPGVGKTSLAQSIAKAT 390 (820)
Q Consensus 367 ~il~l~gppgvGKts~~~sia~al 390 (820)
T Consensus 1 ~Vi~lvGptGvGKTTTiaKLA~~~ 24 (173)
T cd03115 1 TVILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 999998999998899999999999