HHsearch alignment for GI: 254780270 and conserved domain: cd03247

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.28  E-value=0.038  Score=35.11  Aligned_cols=45  Identities=27%  Similarity=0.448  Sum_probs=33.9

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHC
Q ss_conf             4673599860565650279999997708824998618888888835
Q gi|254780270|r  364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIR  409 (820)
Q Consensus       364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~  409 (820)
T Consensus        26 ~~Ge~~aivG~sGsGKSTLl~~l~G~~~p~~G~i~i~g~-~i~~~~   70 (178)
T cd03247          26 KQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGV-PVSDLE   70 (178)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCE-EHHHHH
T ss_conf             699999999999875999999998617667886999999-889978