HHsearch alignment for GI: 254780270 and conserved domain: cd03255
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.65 E-value=0.012 Score=38.74 Aligned_cols=39 Identities=26% Similarity=0.467 Sum_probs=32.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 467359986056565027999999770882499861888
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~ 402 (820)
T Consensus 28 ~~Ge~~~iiG~sGsGKTTll~~i~Gl~~p~~G~I~~~g~ 66 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGT 66 (218)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCE
T ss_conf 699899999999986999999996699999649999999