HHsearch alignment for GI: 254780270 and conserved domain: pfam00910
>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=97.22 E-value=0.00033 Score=50.68 Aligned_cols=98 Identities=21% Similarity=0.417 Sum_probs=50.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHH
Q ss_conf 99860565650279999997708824998618888888835632001456712899999832788739999331554231
Q gi|254780270|r 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSD 448 (820)
Q Consensus 369 l~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~ 448 (820)
T Consensus 1 i~l~G~~G~GKS~~a~~la~~~~~~~~~------------~~~~~~Y~~~~~~~~wdgY----~gq~vvi~DD~~~~~~- 63 (105)
T pfam00910 1 IWLYGPPGCGKSTLAKYLARALLDHLGL------------PKKDSVYSRNPDDDFWDGY----TGQPVVIIDDFGQNPD- 63 (105)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHCC------------CCCCCEEECCCCCCCCCCC----CCCEEEEEECCCCCCC-
T ss_conf 9897999898899999999999998377------------8789779678877656788----9985799965777888-
Q ss_pred CCCC-HHHHHHHHCCCCCCCCEEEEE--C---CCCCCCCCEEEEEECC
Q ss_conf 1771-155665540600168133201--0---3523644279999348
Q gi|254780270|r 449 LRGD-PSAALLEVLDPAQNSSFVDHY--L---EVEYDLSDVMFIMTAN 490 (820)
Q Consensus 449 ~~gd-p~~allevldp~qn~~f~d~y--~---~~~~dls~v~fi~tan 490 (820)
T Consensus 64 --~~~~~~~~~~lvs---~~p~~~~ma~le~Kg~~f~-s~~-vi~tsN 104 (105)
T pfam00910 64 --GPSDEAELIRLVS---STPYPPPMAALEEKGTPFT-SKF-VIVTSN 104 (105)
T ss_pred --CCHHHHHHHHHHC---CCCCCCCCCCHHHCCCCCC-CCE-EEEECC
T ss_conf --6288999998756---9983888667614888446-888-999479