>pfam01057 Parvo_NS1 Parvovirus non-structural protein NS1. This family also contains the NS2 protein. Parvoviruses encode two non-structural proteins, NS1 and NS2. The mRNA for NS2 contains the coding sequence for the first 87 amino acids of NS1, then by an alternative splicing mechanism mRNA from a different reading frame, encoding the last 78 amino acids, makes up the full length of the NS2 mRNA. NS1, is the major non-structural protein. It is essential for DNA replication. It is an 83-kDa nuclear phosphoprotein. It has DNA helicase and ATPase activity.

Probab=97.30 E-value=0.0054 Score=41.48 Aligned_cols=155 Identities=21% Similarity=0.247 Sum_probs=93.7 Q ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCH Q ss_conf 22106889987766520116899999999999984244467359986056565027999999770882499861888888 Q gi|254780270|r 326 TKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDE 405 (820) Q Consensus 326 ~~~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~ 405 (820) T Consensus 77 ~~i~~N~~~~l~~~~gy~P~~~g~~l~~w~----~k~~~krN~i~~~Gp~~TGks~la~ai~~~~~~--~g~-v~~-~N~ 148 (271) T pfam01057 77 FDIEENRIYQLLSLNGYNPAEVGQVLLAWL----SKQGGKRNTVWFYGPASTGKTNLAQAIAHAVPL--YGC-VNW-TNE 148 (271) T ss_pred CCCCCCHHHHHHHHCCCCHHHHHHHHHHHH----HCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCC--EEE-ECC-CCC T ss_conf 664417899999984999899999999998----447888756999889876789999999986895--278-517-877 Q ss_pred HH----HCCCC--CCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCC Q ss_conf 88----35632--0014567128999998327887399993315542311771155665540600168133201035236 Q gi|254780270|r 406 AD----IRGHR--RTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYD 479 (820) Q Consensus 406 ~~----i~gh~--~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~d 479 (820) T Consensus 149 ~fp~~d~~~~~~~wwee~~~~~~~ve~~r~il~G~~i~-vD~k~k~~~~l~~~P-----viiTs--n-----------~- 208 (271) T pfam01057 149 NFPFNDCPNKLLIWWEEGLMTVKVVELAKAILGGTDVR-VDQKCKGSVEIEPTP-----VIITS--N-----------H- 208 (271) T ss_pred CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCE-EECCCCCCCCCCCCC-----EEEEE--C-----------C- T ss_conf 88764465478999807887188999999972999625-634789800237997-----89982--7-----------8- Q ss_pred CCCEEEEEECCCCC--CCHHHCCCEEEEEECCC Q ss_conf 44279999348655--44131172479982587 Q gi|254780270|r 480 LSDVMFIMTANTLN--IPLPLMDRMEIIRIAGY 510 (820) Q Consensus 480 ls~v~fi~tan~~~--i~~~l~drme~i~~~~y 510 (820) T Consensus 209 --di~~v~~g~~~s~~Ha~~Lk~rm~~~~~~~~ 239 (271) T pfam01057 209 --DITLVVDGNTTSFEHAQPLKDRMYKFNLTKR 239 (271) T ss_pred --CEEEEEECCCCCHHHHHHHHHHEEEEEECCC T ss_conf --5799986875357777787653689885767

HHsearch alignment for GI: 254780270 and conserved domain: pfam01057