HHsearch alignment for GI: 254780270 and conserved domain: pfam03969
>pfam03969 AFG1_ATPase AFG1-like ATPase. This family of proteins contains a P-loop motif and are predicted to be ATPases.
Probab=96.15 E-value=0.051 Score=34.12 Aligned_cols=176 Identities=22% Similarity=0.285 Sum_probs=93.6
Q ss_pred HHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCHHH
Q ss_conf 789998522247-8857888889999999875311025789999987654041587663221068899877665201168
Q gi|254780270|r 268 ISDFEARISKIR-LSKEAREKALSELQKLRQMNPLSAESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFGLEK 346 (820)
Q Consensus 268 i~el~~Ki~~~~-lp~e~~~~~~kEl~rL~~m~~~s~E~~v~r~Yld~~~~lPW~~~t~~~~dl~~a~~iLd~~hyGl~~ 346 (820)
T Consensus 4 ~~~Y~~~v~~g~l~~D~~Q~~a~~~L~~L~~~---------------l~~-~~~~~~~~~------~~~----------- 50 (361)
T pfam03969 4 PQRYTAQLQRGAIFPDVAQANAVPALDRLYQR---------------LQA-ADFVRQSGA------GGK----------- 50 (361)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH---------------HHH-CCCCCCCCH------HHH-----------
T ss_conf 99999998679999998999999999999999---------------971-556555523------444-----------
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-CEEEEE----CCCCCCH-HHHCCCCCCCCCCCC
Q ss_conf 9999999999998424446735998605656502799999977088-249986----1888888-883563200145671
Q gi|254780270|r 347 VKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR-QYVRMS----LGGVYDE-ADIRGHRRTYIGSMP 420 (820)
Q Consensus 347 vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r-~f~~is----lgg~~d~-~~i~gh~~ty~ga~p 420 (820)
T Consensus 51 --------~-~~~~~~~~~~kGlYl~G~VGrGKTmLMDlFy~~lp~~~K~R~HFh~FM~~vH~~l~~~~~~------~dp 115 (361)
T pfam03969 51 --------L-WGRKRSHQPVRGLYLWGGVGRGKTHLMDSFFESLPGERKRRTHFHRFMFRVHDELTTLQGG------DDP 115 (361)
T ss_pred --------H-HCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCC------CCC
T ss_conf --------3-1578879999868988998886999999999867753444566789999999999997667------763
Q ss_pred HHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC-C------
Q ss_conf 289999983278873999933155423117711556655406001681332010352364427999934865-5------
Q gi|254780270|r 421 GRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL-N------ 493 (820)
Q Consensus 421 g~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~-~------ 493 (820)
T Consensus 116 --l~~va~~l~~~~~lLCfDEFq------V~DIaDAMIL-------~rLf~~L----f~-~gvvlV~TSN~~P~~LY~~G 175 (361)
T pfam03969 116 --LPIAADRFANEARLLCFDEFE------VDDIGDAMIL-------GRLFEAL----FA-RGVSLVATSNTAPEQLYRNG 175 (361)
T ss_pred --HHHHHHHHHHCCCEEEEEEEE------ECCHHHHHHH-------HHHHHHH----HH-CCCEEEEECCCCHHHHHCCC
T ss_conf --899999997258779976356------1678889999-------9999999----97-79789980899989983687
Q ss_pred ------CCH--HHCCCEEEEEECCCC
Q ss_conf ------441--311724799825878
Q gi|254780270|r 494 ------IPL--PLMDRMEIIRIAGYT 511 (820)
Q Consensus 494 ------i~~--~l~drme~i~~~~y~ 511 (820)
T Consensus 176 LqR~~FlPfI~ll~~~~~v~~l~~~~ 201 (361)
T pfam03969 176 LNRQRFLPAIDLLESHFEVVRVDGPV 201 (361)
T ss_pred CCHHHHHHHHHHHHHHCEEEEECCCC
T ss_conf 41778899999999867899815987