HHsearch alignment for GI: 254780270 and conserved domain: pfam05729
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=96.85 E-value=0.0068 Score=40.76 Aligned_cols=141 Identities=20% Similarity=0.326 Sum_probs=68.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHH--HCC-----CE-EEEECCCCCC-----HHH-HCCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 5998605656502799999977--088-----24-9986188888-----888-35632001456712899999832788
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKA--TGR-----QY-VRMSLGGVYD-----EAD-IRGHRRTYIGSMPGRIIQSLKRAKRS 433 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~a--l~r-----~f-~~islgg~~d-----~~~-i~gh~~ty~ga~pg~ii~~l~~~~~~ 433 (820)
T Consensus 2 ~i~i~G~aG~GKTtll~kl~~~wa~g~~~~~~~~vf~~~~r~~~~~~~~sl~~ll~~~~~-~~~~~~~~~~~~-~~~~~~ 79 (165)
T pfam05729 2 TVILQGEAGSGKTTLLQKLALLWAQGKLPQDFDFVFFLPCRELSRSGEASLADLLFSQWP-EPAAPVSEVWAV-ILELPE 79 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHCCCCCCCHHHHHHHHCC-CCCCCHHHHHHH-HHHCCC
T ss_conf 899982798989999999999998698436972899999567077766899999998767-745763789999-983977
Q ss_pred CEEEEEECHHHHHHHCCC--C--HHHHHH-HHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC-CCCHHHCCCEEEEEE
Q ss_conf 739999331554231177--1--155665-5406001681332010352364427999934865-544131172479982
Q gi|254780270|r 434 NPLLLLDEIDKMGSDLRG--D--PSAALL-EVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL-NIPLPLMDRMEIIRI 507 (820)
Q Consensus 434 npv~~ldeidk~~~~~~g--d--p~~all-evldp~qn~~f~d~y~~~~~dls~v~fi~tan~~-~i~~~l~drme~i~~ 507 (820)
T Consensus 80 k~L~ilDGlDE~~~~~~~~~~~~~~~~~l~~ll--------~~~~----lp~~~vliTsRp~~~~~l~~~-~~~~~~~ei 146 (165)
T pfam05729 80 RVLLILDGLDELASDLGQLDGPLPVLTLLSSLL--------RKKL----LPGASLLLTSRPDALRDLRRG-LEEPRYLEV 146 (165)
T ss_pred CEEEEECCHHHHCCCCCCCCCCCCHHHHHHHHH--------HHCC----CCCCEEEEEECCCHHHHHHHH-CCCCCEEEE
T ss_conf 289996484551444356444577999999998--------4152----788649999680379885776-488718998
Q ss_pred CCCCHHHHHHHHHHHH
Q ss_conf 5878689998999860
Q gi|254780270|r 508 AGYTEEEKLQIAKNHL 523 (820)
Q Consensus 508 ~~y~~~ek~~i~~~~l 523 (820)
T Consensus 147 ~GFs~~~~~~yi~~~F 162 (165)
T pfam05729 147 LGFSEEDRKQYVRKYF 162 (165)
T ss_pred CCCCHHHHHHHHHHHC
T ss_conf 8999999999999867