HHsearch alignment for GI: 254780270 and conserved domain: pfam06309
>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=97.75 E-value=0.00022 Score=52.09 Aligned_cols=77 Identities=27% Similarity=0.263 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHH-----CCCEEEEECC
Q ss_conf 2106889987766520116899999999999984244-467359986056565027999999770-----8824998618
Q gi|254780270|r 327 KKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIK-NKGLILCFVGPPGVGKTSLAQSIAKAT-----GRQYVRMSLG 400 (820)
Q Consensus 327 ~~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~~~-~~g~il~l~gppgvGKts~~~sia~al-----~r~f~~islg 400 (820)
T Consensus 13 ~~~~~~Le~~L~~~lfGQhla~~~v~~al~~~l~~~~p~KpLVlSfHG~tGtGKn~vs~liA~~Ly~~G~~S~~Vh~fi~ 92 (127)
T pfam06309 13 SFNYHGLERDLARRLFGQHLVKQLVVRSVKGHWENPKPRKPLVLSFHGWTGTGKNFVAEIIADNLYRDGLRSPYVHHFVA 92 (127)
T ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECC
T ss_conf 88779999999875347798999999999999748999997488701899987989999999998754347875688424
Q ss_pred CCC
Q ss_conf 888
Q gi|254780270|r 401 GVY 403 (820)
Q Consensus 401 g~~ 403 (820)
T Consensus 93 ~~h 95 (127)
T pfam06309 93 TNH 95 (127)
T ss_pred CCC
T ss_conf 224