HHsearch alignment for GI: 254780270 and conserved domain: pfam06309

>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=97.75  E-value=0.00022  Score=52.09  Aligned_cols=77  Identities=27%  Similarity=0.263  Sum_probs=62.0

Q ss_pred             CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHH-----CCCEEEEECC
Q ss_conf             2106889987766520116899999999999984244-467359986056565027999999770-----8824998618
Q gi|254780270|r  327 KKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIK-NKGLILCFVGPPGVGKTSLAQSIAKAT-----GRQYVRMSLG  400 (820)
Q Consensus       327 ~~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~~~-~~g~il~l~gppgvGKts~~~sia~al-----~r~f~~islg  400 (820)
T Consensus        13 ~~~~~~Le~~L~~~lfGQhla~~~v~~al~~~l~~~~p~KpLVlSfHG~tGtGKn~vs~liA~~Ly~~G~~S~~Vh~fi~   92 (127)
T pfam06309        13 SFNYHGLERDLARRLFGQHLVKQLVVRSVKGHWENPKPRKPLVLSFHGWTGTGKNFVAEIIADNLYRDGLRSPYVHHFVA   92 (127)
T ss_pred             CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECC
T ss_conf             88779999999875347798999999999999748999997488701899987989999999998754347875688424


Q ss_pred             CCC
Q ss_conf             888
Q gi|254780270|r  401 GVY  403 (820)
Q Consensus       401 g~~  403 (820)
T Consensus        93 ~~h   95 (127)
T pfam06309        93 TNH   95 (127)
T ss_pred             CCC
T ss_conf             224