HHsearch alignment for GI: 254780270 and conserved domain: pfam06745
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=95.62 E-value=0.021 Score=37.05 Aligned_cols=39 Identities=28% Similarity=0.392 Sum_probs=29.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHH-H-HH--CCCEEEEECC
Q ss_conf 44467359986056565027999999-7-70--8824998618
Q gi|254780270|r 362 IKNKGLILCFVGPPGVGKTSLAQSIA-K-AT--GRQYVRMSLG 400 (820)
Q Consensus 362 ~~~~g~il~l~gppgvGKts~~~sia-~-al--~r~f~~islg 400 (820)
T Consensus 15 Gi~~gs~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis~e 57 (231)
T pfam06745 15 GIPEGRVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTLE 57 (231)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 9829969999858972599999999999998658968999813