HHsearch alignment for GI: 254780270 and conserved domain: pfam07728
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.52 E-value=2.7e-14 Score=127.02 Aligned_cols=126 Identities=28% Similarity=0.421 Sum_probs=93.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHH-CCCEEEEECCCCCCHHHHCCCCCC---CCCCCCHHHHHHHHHCCCCCEEEEEECHHH
Q ss_conf 9986056565027999999770-882499861888888883563200---145671289999983278873999933155
Q gi|254780270|r 369 LCFVGPPGVGKTSLAQSIAKAT-GRQYVRMSLGGVYDEADIRGHRRT---YIGSMPGRIIQSLKRAKRSNPLLLLDEIDK 444 (820)
Q Consensus 369 l~l~gppgvGKts~~~sia~al-~r~f~~islgg~~d~~~i~gh~~t---y~ga~pg~ii~~l~~~~~~npv~~ldeidk 444 (820)
T Consensus 2 vll~Gp~G~GKT~la~~la~~l~~~~~~~i~~~~~~~~~dl~G~~~~~~~~~~~~~g~l~~a~~~g----~vl~lDEin~ 77 (139)
T pfam07728 2 VLLVGPPGTGKSELAERLAAALSNRPVFYVQLTRDTTEEDLKGRRNIANGTTSWVDGPLVRAAREG----EIAVLDEINR 77 (139)
T ss_pred EEEECCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHCCCCEECCCCCEEEECCHHHCCCCCC----CEEEECCHHH
T ss_conf 899989975699999999998079831112146556522205734237993578155141010128----6899634344
Q ss_pred HHHHCCCCHHHHHHHHCCCCCCCCEE-EEECCC-CC-CCCCEEEEEECCC----CC-CCHHHCCCE
Q ss_conf 42311771155665540600168133-201035-23-6442799993486----55-441311724
Q gi|254780270|r 445 MGSDLRGDPSAALLEVLDPAQNSSFV-DHYLEV-EY-DLSDVMFIMTANT----LN-IPLPLMDRM 502 (820)
Q Consensus 445 ~~~~~~gdp~~allevldp~qn~~f~-d~y~~~-~~-dls~v~fi~tan~----~~-i~~~l~drm 502 (820)
T Consensus 78 a~~~v----~~~L~~~le~~~~~~~~~~~~~~~~~~~~~~~f~viaT~N~~~~g~~~l~~Al~~RF 139 (139)
T pfam07728 78 ANPDV----LNSLLSLLDERRLLLPEGGELVKVAPDDFAKRFRLIATMNPLDRGLNELSPALRSRF 139 (139)
T ss_pred CCHHH----HHHHHHHHCCCEEEECCCCEEECCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHCCC
T ss_conf 89999----999999974896983689727336666789996999975896547800998997509