HHsearch alignment for GI: 254780270 and conserved domain: smart00350

Probab=98.72  E-value=4.4e-07  Score=72.43  Aligned_cols=170  Identities=24%  Similarity=0.381  Sum_probs=99.4

Q ss_pred             HHHHHHHCHHHHHHHHHHHHH--HHHHCC---CCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCEEEEE----CCCCCCH
Q ss_conf             776652011689999999999--998424---44673-5998605656502799999977088249986----1888888
Q gi|254780270|r  336 ILDQDHFGLEKVKERIIEYLA--VQMRVI---KNKGL-ILCFVGPPGVGKTSLAQSIAKATGRQYVRMS----LGGVYDE  405 (820)
Q Consensus       336 iLd~~hyGl~~vK~rile~la--v~~~~~---~~~g~-il~l~gppgvGKts~~~sia~al~r~f~~is----lgg~~d~  405 (820)
T Consensus       200 SiaP~I~G~~~vK~allL~L~GG~~~~~~~g~~~Rg~ihiLLvGDPGtgKSqlLk~~~~iaprsvytsG~gsS~aGLTa-  278 (509)
T smart00350      200 SLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTA-  278 (509)
T ss_pred             HHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCEE-
T ss_conf             5497323878899999999708876648988504154149984699823629999999858860687344455577068-


Q ss_pred             HHHC---CCCCC-CCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCC-
Q ss_conf             8835---63200-145671289999983278873999933155423117711556655406001681332010352364-
Q gi|254780270|r  406 ADIR---GHRRT-YIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDL-  480 (820)
Q Consensus       406 ~~i~---gh~~t-y~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dl-  480 (820)
T Consensus       279 av~rd~~~ge~~leaGAL----V------lAD~GiccIDEfdKm~~~dr----~alhEaME--QQtisiaKa-Gi~~tL~  341 (509)
T smart00350      279 AVTRDPETREFTLEGGAL----V------LADNGVCCIDEFDKMDDSDR----TAIHEAME--QQTISIAKA-GITTTLN  341 (509)
T ss_pred             EEEECCCCCCEEECCCCE----E------CCCCCEEEEEEHHHCCHHHH----HHHHHHHH--HCEEEEECC-CEEEEEE
T ss_conf             999817888378725641----2------05675478521320787789----99999997--487787437-5179985


Q ss_pred             CCEEEEEECCC--------------CCCCHHHCCCEEEEEEC--CCCHHHHHHHHHHHH
Q ss_conf             42799993486--------------55441311724799825--878689998999860
Q gi|254780270|r  481 SDVMFIMTANT--------------LNIPLPLMDRMEIIRIA--GYTEEEKLQIAKNHL  523 (820)
Q Consensus       481 s~v~fi~tan~--------------~~i~~~l~drme~i~~~--~y~~~ek~~i~~~~l  523 (820)
T Consensus       342 aR~sVlAAaNP~~g~yd~~~s~~eni~l~~~LLSRFDLIf~l~D~~~~~~D~~ia~hil  400 (509)
T smart00350      342 ARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVV  400 (509)
T ss_pred             CCCEEEEEECCCCCCCCCCCCHHHHCCCCHHHHHHCCEEEEEECCCCHHHHHHHHHHHH
T ss_conf             57359986556556378889999946898035410238999615898788999999999