HHsearch alignment for GI: 254780270 and conserved domain: smart00382
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.58 E-value=2.2e-07 Score=74.66 Aligned_cols=127 Identities=25% Similarity=0.311 Sum_probs=74.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCC---EEEEECCCCCCHHHHC----CCCCCCCCCCCHHHHH-HHHHCCCCC-E
Q ss_conf 67359986056565027999999770882---4998618888888835----6320014567128999-998327887-3
Q gi|254780270|r 365 KGLILCFVGPPGVGKTSLAQSIAKATGRQ---YVRMSLGGVYDEADIR----GHRRTYIGSMPGRIIQ-SLKRAKRSN-P 435 (820)
Q Consensus 365 ~g~il~l~gppgvGKts~~~sia~al~r~---f~~islgg~~d~~~i~----gh~~ty~ga~pg~ii~-~l~~~~~~n-p 435 (820)
T Consensus 1 ~~~~ill~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPD 80 (148)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99789999999702999999999872668996899875998988898765300011221051999999999999844998
Q ss_pred EEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC--CCCCHHHCCCE
Q ss_conf 99993315542311771155665540600168133201035236442799993486--55441311724
Q gi|254780270|r 436 LLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT--LNIPLPLMDRM 502 (820)
Q Consensus 436 v~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~--~~i~~~l~drm 502 (820)
T Consensus 81 viiiDei~~~~~~~~----~~~~~~~~~-------~~~~~~~~~~~~~~vi~~~n~~~~~~~~~~~~~~ 138 (148)
T smart00382 81 VLILDEITSLLDAEQ----EALLLLLEE-------LRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRF 138 (148)
T ss_pred EEEEECCHHHCCCCC----HHHHHHHHH-------HHHHCCCCCCCCEEEEEEECCCCCCCHHHHCCCC
T ss_conf 999827502147620----799999999-------9985176578998999956995224987707447