HHsearch alignment for GI: 254780270 and conserved domain: smart00464
>smart00464 LON Found in ATP-dependent protease La (LON). N-terminal domain of the ATP-dependent protease La (LON), present also in other bacterial ORFs.
Probab=98.76 E-value=1.7e-08 Score=83.24 Aligned_cols=91 Identities=33% Similarity=0.527 Sum_probs=78.7
Q ss_pred EEEEEEECCCEECCCEEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCHHHEECCCEEEEEEEEEECCCCEE
Q ss_conf 67566317825688714306429489999999999729-84999973686777888656025314899999799889809
Q gi|254780270|r 27 IYPLLPLRDIVVFPYMIVPLFVGREKSVRALDEAMNSH-KKIILVTQMNSNDENPIASSVYRIGTIVDIVQILRLPDGTV 105 (820)
Q Consensus 27 ~LPIlPLrn~VLFPG~vlPL~V~eprsi~aIe~al~~d-~~I~vV~qkD~~~e~p~~edLy~VGTlakI~qi~klpDG~~ 105 (820)
T Consensus 1 ~~~~lpi~~~~lfpg~~~~i~v~~~~~v~ai~e~~~~~qp~v~~~l~~d~~~~~-------------------------- 54 (92)
T smart00464 1 TLPLLPIRRRPLFPGFVLPIPVKRPKSVAAIKEALRRSQPYVIVFLLQDDPTET-------------------------- 54 (92)
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC--------------------------
T ss_conf 975212567766887557788388889999999998169825688853689998--------------------------
Q ss_pred EEEEEEEEEEEEEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHH
Q ss_conf 99999754799998870798199999980488888478999999999999999985455777888764126886789999
Q gi|254780270|r 106 KILVEGSVRARIVEYIEREDFLEAITQVLPDPTEDPVELEALSRSVIAEFSNYIKLNKKISPEVIGITSQIEGFSKLADV 185 (820)
Q Consensus 106 ~ILVeGl~RvkI~ei~~~~pyl~A~Ve~l~d~~~d~~eleAL~~~L~e~f~eli~l~~~i~~E~~~~l~~iddp~~LAD~ 185 (820)
T Consensus 55 -------------------------------------------------------------------------~~~~s~~ 61 (92)
T smart00464 55 -------------------------------------------------------------------------PEPLSDT 61 (92)
T ss_pred -------------------------------------------------------------------------CCCCCHH
T ss_conf -------------------------------------------------------------------------8644100
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8852358989999987432479999999999
Q gi|254780270|r 186 IAANLSIKVAERQKILEAVSVKERLEMLLVF 216 (820)
Q Consensus 186 IAs~L~l~~eeKQeLLE~~Di~eRLe~Ll~l 216 (820)
T Consensus 62 ~~~~~~~~~~~~q~lL~~~~~~~R~~~~i~~ 92 (92)
T smart00464 62 IAALMPLELHEKQELLELEGTNKRLEKVIKL 92 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf 6676168898888999861601778887429