HHsearch alignment for GI: 254780270 and conserved domain: smart00464

>smart00464 LON Found in ATP-dependent protease La (LON). N-terminal domain of the ATP-dependent protease La (LON), present also in other bacterial ORFs.
Probab=98.76  E-value=1.7e-08  Score=83.24  Aligned_cols=91  Identities=33%  Similarity=0.527  Sum_probs=78.7

Q ss_pred             EEEEEEECCCEECCCEEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCHHHEECCCEEEEEEEEEECCCCEE
Q ss_conf             67566317825688714306429489999999999729-84999973686777888656025314899999799889809
Q gi|254780270|r   27 IYPLLPLRDIVVFPYMIVPLFVGREKSVRALDEAMNSH-KKIILVTQMNSNDENPIASSVYRIGTIVDIVQILRLPDGTV  105 (820)
Q Consensus        27 ~LPIlPLrn~VLFPG~vlPL~V~eprsi~aIe~al~~d-~~I~vV~qkD~~~e~p~~edLy~VGTlakI~qi~klpDG~~  105 (820)
T Consensus         1 ~~~~lpi~~~~lfpg~~~~i~v~~~~~v~ai~e~~~~~qp~v~~~l~~d~~~~~--------------------------   54 (92)
T smart00464        1 TLPLLPIRRRPLFPGFVLPIPVKRPKSVAAIKEALRRSQPYVIVFLLQDDPTET--------------------------   54 (92)
T ss_pred             CCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC--------------------------
T ss_conf             975212567766887557788388889999999998169825688853689998--------------------------


Q ss_pred             EEEEEEEEEEEEEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHH
Q ss_conf             99999754799998870798199999980488888478999999999999999985455777888764126886789999
Q gi|254780270|r  106 KILVEGSVRARIVEYIEREDFLEAITQVLPDPTEDPVELEALSRSVIAEFSNYIKLNKKISPEVIGITSQIEGFSKLADV  185 (820)
Q Consensus       106 ~ILVeGl~RvkI~ei~~~~pyl~A~Ve~l~d~~~d~~eleAL~~~L~e~f~eli~l~~~i~~E~~~~l~~iddp~~LAD~  185 (820)
T Consensus        55 -------------------------------------------------------------------------~~~~s~~   61 (92)
T smart00464       55 -------------------------------------------------------------------------PEPLSDT   61 (92)
T ss_pred             -------------------------------------------------------------------------CCCCCHH
T ss_conf             -------------------------------------------------------------------------8644100


Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8852358989999987432479999999999
Q gi|254780270|r  186 IAANLSIKVAERQKILEAVSVKERLEMLLVF  216 (820)
Q Consensus       186 IAs~L~l~~eeKQeLLE~~Di~eRLe~Ll~l  216 (820)
T Consensus        62 ~~~~~~~~~~~~q~lL~~~~~~~R~~~~i~~   92 (92)
T smart00464       62 IAALMPLELHEKQELLELEGTNKRLEKVIKL   92 (92)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf             6676168898888999861601778887429