HHsearch alignment for GI: 254780270 and conserved domain: smart00487

Probab=95.14  E-value=0.2  Score=29.60  Aligned_cols=95  Identities=25%  Similarity=0.342  Sum_probs=50.4

Q ss_pred             CEEEEECCCCCCHHHH-HHHHHHHHCCC----EEEEE--------------------------CCCCCCH----HHHCCC
Q ss_conf             3599860565650279-99999770882----49986--------------------------1888888----883563
Q gi|254780270|r  367 LILCFVGPPGVGKTSL-AQSIAKATGRQ----YVRMS--------------------------LGGVYDE----ADIRGH  411 (820)
Q Consensus       367 ~il~l~gppgvGKts~-~~sia~al~r~----f~~is--------------------------lgg~~d~----~~i~gh  411 (820)
T Consensus        25 ~~~~i~~~tGsGKT~~~~~~~~~~~~~~~~~~~li~~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (201)
T smart00487       25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESG  104 (201)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHCC
T ss_conf             98899899996099999999999863389975999908599999999886010210204455652477379999999759


Q ss_pred             CCCCCCCCCHHHHHHHHHC--CCCCE-EEEEECHHHHHHHCCCCHHHHHHHHC
Q ss_conf             2001456712899999832--78873-99993315542311771155665540
Q gi|254780270|r  412 RRTYIGSMPGRIIQSLKRA--KRSNP-LLLLDEIDKMGSDLRGDPSAALLEVL  461 (820)
Q Consensus       412 ~~ty~ga~pg~ii~~l~~~--~~~np-v~~ldeidk~~~~~~gdp~~allevl  461 (820)
T Consensus       105 ~~~i~i~t~~~l~~~~~~~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~  157 (201)
T smart00487      105 KTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL  157 (201)
T ss_pred             CCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECHHHHHCCCCHHHHHHHHHHC
T ss_conf             99899955899999997275452543199998967751257099999999967