HHsearch alignment for GI: 254780270 and conserved domain: smart00763
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.67 E-value=1.6e-06 Score=68.13 Aligned_cols=55 Identities=31% Similarity=0.640 Sum_probs=46.0
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 7665201168999999999999842444673599860565650279999997708
Q gi|254780270|r 337 LDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATG 391 (820)
Q Consensus 337 Ld~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~ 391 (820)
T Consensus 49 F~d~~fG~e~~i~~~V~~~k~AA~g~~~~k~IllL~GPvGsGKStl~~~Lk~~lE 103 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1013116489999999999999844671256999988998877999999999999