RPSBLAST alignment for GI: 254780270 and conserved domain: TIGR03345

>gnl|CDD|163222 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. Length = 852

 Score = 49.9 bits (120), Expect = 2e-06
 Identities = 73/289 (25%), Positives = 116/289 (40%), Gaps = 50/289 (17%)

Query: 176 IEGFSKLADVIAANLSIKVAERQKILEAVSVKERLEMLLVFMESEISVLQVE-KRIRSRV 234
           +E   +    +   L     E     +     ERL  L     +E++ L+ E   + +R 
Sbjct: 421 LEDLRRRIAALELELDALEREAALGAD---HDERLAEL----RAELAALEAELAALEARW 473

Query: 235 KRQMEKTQREYYLHEQMKAIQKELDNGEEGRDEISDFEARISKIRLSKEAREKALSELQK 294
           +++ E       L E + A++ EL+   +      D  A  +++       E AL+  Q 
Sbjct: 474 QQEKE-------LVEAILALRAELEADAD--APADDDAALRAQLA----ELEAALASAQG 520

Query: 295 -LRQMNPLSAESSVVRNYLDWLLGVPWDK--KSKTKKNLDFAI----RILDQDHFGLEKV 347
               + P     +V     DW  G+P  +  + + +  L        R++ QDH  LE +
Sbjct: 521 EEPLVFPEVDAQAVAEVVADWT-GIPVGRMVRDEIEAVLSLPDRLAERVIGQDH-ALEAI 578

Query: 348 KERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKAT--GRQY---VRMSLGGV 402
            ERI    A      K  G+ L  VGP GVGKT  A ++A+    G Q    + MS    
Sbjct: 579 AERIRTARAGLEDPRKPLGVFL-LVGPSGVGKTETALALAELLYGGEQNLITINMS---E 634

Query: 403 YDEADIRGHR-RTYIGSMPGRIIQS----LKRAKRSNP--LLLLDEIDK 444
           + EA    H      GS PG +       L  A R  P  ++LLDE++K
Sbjct: 635 FQEA----HTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEK 679