RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780270|ref|YP_003064683.1| ATP-dependent protease La
[Candidatus Liberibacter asiaticus str. psy62]
(820 letters)
>gnl|CDD|30814 COG0466, Lon, ATP-dependent Lon protease, bacterial type
[Posttranslational modification, protein turnover,
chaperones].
Length = 782
Score = 1102 bits (2851), Expect = 0.0
Identities = 476/774 (61%), Positives = 607/774 (78%), Gaps = 4/774 (0%)
Query: 26 IIYPLLPLRDIVVFPYMIVPLFVGREKSVRALDEAM-NSHKKIILVTQMNSNDENPIASS 84
I P+LPLRD+VVFP M++PLFVGREKS++AL+EAM N K I+LVTQ +++ + P
Sbjct: 8 IELPVLPLRDVVVFPGMVIPLFVGREKSIKALEEAMKNDQKYILLVTQKDASTDEPTEDD 67
Query: 85 VYRIGTIVDIVQILRLPDGTVKILVEGSVRARIVEYIEREDFLEAITQVLPD-PTEDPVE 143
+Y +GT+ I+QIL+LPDGTVK+LVEG R RI + + E+F EA ++LPD P ++ E
Sbjct: 68 LYEVGTLAKILQILKLPDGTVKVLVEGLQRVRISKLSDEEEFFEAEIELLPDEPIDEERE 127
Query: 144 LEALSRSVIAEFSNYIKLNKKISPEVIGITSQIEGFSKLADVIAANLSIKVAERQKILEA 203
+EAL RS+++EF Y KLNKKI PE + + I+ KLAD IAA+L +K+ E+Q+ILE
Sbjct: 128 IEALVRSILSEFEEYAKLNKKIPPEELQSLNSIDDPGKLADTIAAHLPLKLEEKQEILET 187
Query: 204 VSVKERLEMLLVFMESEISVLQVEKRIRSRVKRQMEKTQREYYLHEQMKAIQKELDNGEE 263
+ VKERLE LL +E EI +LQ+EKRIR +VK QMEK+QREYYL EQ+KAIQKEL ++
Sbjct: 188 LDVKERLEKLLDLLEKEIDLLQLEKRIRKKVKEQMEKSQREYYLREQLKAIQKELGEDDD 247
Query: 264 GRDEISDFEARISKIRLSKEAREKALSELQKLRQMNPLSAESSVVRNYLDWLLGVPWDKK 323
+DE+ + +I K++L KEA+EKA EL+KL M+P+SAE++V+RNYLDWLL +PW K+
Sbjct: 248 DKDEVEELREKIEKLKLPKEAKEKAEKELKKLETMSPMSAEATVIRNYLDWLLDLPWGKR 307
Query: 324 SKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLA 383
SK K +L A +ILD+DH+GLEKVKERI+EYLAVQ K KG ILC VGPPGVGKTSL
Sbjct: 308 SKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLG 367
Query: 384 QSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEID 443
+SIAKA GR++VR+SLGGV DEA+IRGHRRTYIG+MPG+IIQ +K+A NP+ LLDEID
Sbjct: 368 KSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEID 427
Query: 444 KMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRM 502
KMGS RGDP++ALLEVLDP QN++F DHYLEV YDLS VMFI TAN+L+ IP PL+DRM
Sbjct: 428 KMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRM 487
Query: 503 EIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFE 562
E+IR++GYTE+EKL+IAK HL+ K L EH LK+ E I+D + DIIR +T EAGVR+ E
Sbjct: 488 EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLE 547
Query: 563 RALMKIARKAVTKIVKNS-DTTVSINENNLQDYLGVPRYKYGKIEGEDQVGIVTGLAWTE 621
R + KI RKA KI+ + V I+E NL+ YLGVP ++YGK E EDQVG+VTGLAWTE
Sbjct: 548 REIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGVPVFRYGKAEEEDQVGVVTGLAWTE 607
Query: 622 VGGEILTVEGVIMPGKGEITITGNLKEIMKESILAASSYVRSKATTFGIIPSAFNEINIH 681
VGG++LT+E V MPGKG++T+TG+L ++MKES AA SYVRS+A GI P F + +IH
Sbjct: 608 VGGDLLTIEAVKMPGKGKLTLTGSLGDVMKESAQAALSYVRSRAEKLGIDPDFFEKRDIH 667
Query: 682 VHVPEGATPKDGPSAGIAMATAIVSIMTCIPVYKNVAMTGELTLRGRVLPIGGLKEKLLA 741
+HVPEGATPKDGPSAGI MATA+VS++T PV +VAMTGE+TLRGRVLPIGGLKEKLLA
Sbjct: 668 IHVPEGATPKDGPSAGITMATALVSLLTGKPVRADVAMTGEITLRGRVLPIGGLKEKLLA 727
Query: 742 ALRAGVTKVLIPEENIKDLMDIPENVKNGLEIIPVSFMGEVLKHALLRMPDPLE 795
A R G+ V+IP++N +DL +IP+NVK GLEI PV + EVLK AL+ P+P+
Sbjct: 728 AHRGGIKTVIIPKDNERDLEEIPDNVKEGLEIHPVKTIDEVLKLALVGNPEPIS 781
>gnl|CDD|37215 KOG2004, KOG2004, KOG2004, Mitochondrial ATP-dependent protease
PIM1/LON [Posttranslational modification, protein
turnover, chaperones].
Length = 906
Score = 670 bits (1729), Expect = 0.0
Identities = 311/827 (37%), Positives = 479/827 (57%), Gaps = 69/827 (8%)
Query: 29 PLLPLRDIVVFPYMIVPLFVGREKSVRALDEAMNSHKKII--LVTQMNSNDENPIAS--- 83
P LP+ +FP + V K + + E + + I + + +S+ ++ I S
Sbjct: 70 PALPITRGPLFPGFYKRIEVKSPKVLALIREKLRRQQPYIGAFLLKDDSSGDSVITSINE 129
Query: 84 -----------------SVYRIGTIVDIVQI---LRLPDGTVKILVEGSVRARIVEYIER 123
+R I ++ I + +LV G R I E E
Sbjct: 130 VYILEVFPGKDKLRMVLYPHRRIRITELAPISEGKEDAEVEYSLLVTGLSRLNITEMKEE 189
Query: 124 EDF---LEAITQVLPDPTEDPVELEALSRSVIAEFSNYIKLNKKISPEVIGITSQIEGFS 180
++ + V +P + E++AL+ ++ + I +N +V ++ I +
Sbjct: 190 KEAEVLSVEVENVKDEPFKKDEEIKALTSEILKTLRDIIAVNSLFREQVATLSQLIVEDN 249
Query: 181 --KLADVIAANLSIKVAERQKILEAVSVKERLEMLLVFMESEISVLQVEKRIRSRVKRQM 238
KLAD AA + E Q++LE +++RLE L ++ E+ + +++++I V+ ++
Sbjct: 250 PIKLADFGAAISGAEFHELQEVLEETDIEKRLEKALELLKKELELAKLQQKIGKEVEEKI 309
Query: 239 EKTQREYYLHEQMKAIQKELDNGEEGRDEISD-FEARISKIRLSKEAREKALSELQKLRQ 297
++ REY L EQ+KAI+KEL ++ +D + + F RI +++ + EL KL+
Sbjct: 310 KQDHREYLLREQLKAIKKELGIEKDDKDALVEKFRERIKSLKMPDHVLKVIDEELTKLKL 369
Query: 298 MNPLSAESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAV 357
+ P S+E +V RNYLDWL +PW K S +L A ILD+DH+G+E VKERI+E++AV
Sbjct: 370 LEPSSSEFNVTRNYLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAV 429
Query: 358 QMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIG 417
+G ILCFVGPPGVGKTS+A+SIA+A R++ R S+GG+ D A+I+GHRRTY+G
Sbjct: 430 GKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVG 489
Query: 418 SMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVE 477
+MPG+IIQ LK+ K NPL+L+DE+DK+GS +GDP++ALLE+LDP QN++F+DHYL+V
Sbjct: 490 AMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVP 549
Query: 478 YDLSDVMFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQE 536
DLS V+FI TAN ++ IP PL+DRME+I ++GY EEK++IA+ +L+ + L + LK E
Sbjct: 550 VDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPE 609
Query: 537 ECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDT-------------- 582
+ ISD LL +I + EAGVR+ ++ + KI RK K+V+ ++
Sbjct: 610 QVKISDDALLALIERYCREAGVRNLQKQIEKICRKVALKVVEGENSKEESAEKNGRESTE 669
Query: 583 ---------------------TVSINENNLQDYLGVPRYKYGKIEGEDQVGIVTGLAWTE 621
+ I+E+NLQD LG P + ++ G+V GLAWT
Sbjct: 670 KSIEEAESSTSGADLLPEMPENIEIDESNLQDILGPPVFTSERMYEVTPPGVVMGLAWTA 729
Query: 622 VGGEILTVEGVIMPGKGE--ITITGNLKEIMKESILAASSYVRSKATTFGIIPSAFNEIN 679
+GG L VE +M G G+ + ITG L ++MKES A ++ R+ + +
Sbjct: 730 MGGSTLYVETSLMRGLGDGSLEITGQLGDVMKESAQIAYTWARAFLSKKEPENKFLENSD 789
Query: 680 IHVHVPEGATPKDGPSAGIAMATAIVSIMTCIPVYKNVAMTGELTLRGRVLPIGGLKEKL 739
IH+HVPEGATPKDGPSAG+ M TA++S+ PV +++AMTGE+TL G+VLP+GG+KEK
Sbjct: 790 IHLHVPEGATPKDGPSAGVTMVTALLSLALGKPVRQDLAMTGEVTLTGKVLPVGGIKEKT 849
Query: 740 LAALRAGVTKVLIPEENIKDLMDIPENVKNGLEIIPVSFMGEVLKHA 786
+AA R+GV ++ PE N +D ++PENVK GLE+ +V + A
Sbjct: 850 IAARRSGVKTIIFPEANRRDFEELPENVKEGLEVHFAETYEDVFEAA 896
>gnl|CDD|114104 pfam05362, Lon_C, Lon protease (S16) C-terminal proteolytic domain.
The Lon serine proteases must hydrolyse ATP to degrade
protein substrates. In Escherichia coli, these proteases
are involved in turnover of intracellular proteins,
including abnormal proteins following heat-shock. The
active site for protease activity resides in a
C-terminal domain. The Lon proteases are classified as
family S16 in Merops.
Length = 205
Score = 353 bits (909), Expect = 9e-98
Identities = 139/205 (67%), Positives = 169/205 (82%)
Query: 585 SINENNLQDYLGVPRYKYGKIEGEDQVGIVTGLAWTEVGGEILTVEGVIMPGKGEITITG 644
+I NL+ YLGVPR++Y + E EDQVG+VTGLAWTEVGG++LT+E IMPGKG++T+TG
Sbjct: 1 TITAKNLEKYLGVPRFRYEEAEKEDQVGVVTGLAWTEVGGDLLTIEATIMPGKGKLTLTG 60
Query: 645 NLKEIMKESILAASSYVRSKATTFGIIPSAFNEINIHVHVPEGATPKDGPSAGIAMATAI 704
L ++MKES AA SYVRS+A GI P F + +IH+HVPEGATPKDGPSAG+ MATA+
Sbjct: 61 QLGDVMKESAQAALSYVRSRAEELGIDPDFFEKKDIHIHVPEGATPKDGPSAGVTMATAL 120
Query: 705 VSIMTCIPVYKNVAMTGELTLRGRVLPIGGLKEKLLAALRAGVTKVLIPEENIKDLMDIP 764
VS +T IPV K+VAMTGE+TLRGRVLPIGGLKEKLLAA RAG+ V+IP+EN KDL +IP
Sbjct: 121 VSALTGIPVRKDVAMTGEITLRGRVLPIGGLKEKLLAAHRAGIKTVIIPKENEKDLEEIP 180
Query: 765 ENVKNGLEIIPVSFMGEVLKHALLR 789
ENV+ GLEIIPV + EVLKHAL+
Sbjct: 181 ENVREGLEIIPVEHVDEVLKHALVG 205
>gnl|CDD|145377 pfam02190, LON, ATP-dependent protease La (LON) domain.
Length = 193
Score = 161 bits (408), Expect = 1e-39
Identities = 73/195 (37%), Positives = 116/195 (59%), Gaps = 6/195 (3%)
Query: 28 YPLLPLRDIVVFPYMIVPLFVGREKSVRALDEAMNSHKKIILVTQMNSNDENPIASSVYR 87
PLLPLR++V+FP M++PL V + + A++EA+ S + + + S + P +Y
Sbjct: 2 LPLLPLRNVVLFPGMVLPLHVFEPRYIAAIEEALESDRPFFGLV-LVSQKDPPSPDDLYE 60
Query: 88 IGTIVDIVQILRLPDGTVKILVEGSVRARIVEYIERED-FLEAITQVLP--DPTEDPVEL 144
+GT+ I+QI++LPDG +KILVEG R RI+E E+E+ +L A + LP + E L
Sbjct: 61 VGTLARIIQIVKLPDGRLKILVEGLERFRILELEEQEEPYLVAEVEDLPEEESEELEEAL 120
Query: 145 EALSRSVIAEFSNYIKLNKKISPEVIGITSQIEGFSKLADVIAANLSIKVAERQKILEAV 204
EAL + +I + L + E++ IE +LAD+IA+ L + E+Q++LE +
Sbjct: 121 EALVKELIELLKELLPLL--LPLELLLKIDNIEDPGRLADLIASLLPLSPEEKQELLETL 178
Query: 205 SVKERLEMLLVFMES 219
VKERLE LL ++
Sbjct: 179 DVKERLEKLLELLKR 193
>gnl|CDD|31266 COG1067, LonB, Predicted ATP-dependent protease [Posttranslational
modification, protein turnover, chaperones].
Length = 647
Score = 105 bits (262), Expect = 7e-23
Identities = 67/248 (27%), Positives = 110/248 (44%), Gaps = 33/248 (13%)
Query: 568 IARKAVTKIVKNSDTTVS-INENNLQDYLGVPRYKYGKIEGEDQVGIVTGLAWTEVG--- 623
I + V + ++ + + E ++D G + EGE +VG + GL+ EV
Sbjct: 387 ITAEDVEEALQKRELREGQLAERYIEDIKG--GQILIETEGE-RVGQINGLSVIEVPGHH 443
Query: 624 --GEILTVEGVIMPGKGEITITGNLKEIMKESILAASSYVRSKATTFGIIPSAFNEINIH 681
GE + + G GEI E + +I ++ F + ++ IH
Sbjct: 444 AFGEPARISCAVHKGDGEIVDIERKAE-LAGNIHNKGMMIK---QAFLMSILNYD---IH 496
Query: 682 VHVPEGAT------PKDGPSAGIAMATAIVSIMTCIPVYKNVAMTGELTLRGRVLPIGGL 735
+ DG SA +A A A++S ++ IPV +++A+TG + G V P+GG+
Sbjct: 497 IPFSASLVFEQSYGEVDGDSASLAEACALISALSKIPVDQDIAITGSIDQFGEVQPVGGV 556
Query: 736 KEKL-------LAALRAGVTKVLIPEENIKDLM---DIPENVKNG-LEIIPVSFMGEVLK 784
EK+ AA G V+IP+ N+KDL D+ + VK G EI PV + E L+
Sbjct: 557 NEKIEGFFRVCQAAGLTGEQGVIIPKANVKDLSLSEDVVKAVKEGKFEIWPVETIDEALE 616
Query: 785 HALLRMPD 792
L +
Sbjct: 617 LLLGKGEG 624
>gnl|CDD|143797 pfam00004, AAA, ATPase family associated with various cellular
activities (AAA). AAA family proteins often perform
chaperone-like functions that assist in the assembly,
operation, or disassembly of protein complexes.
Length = 131
Score = 97.7 bits (244), Expect = 1e-20
Identities = 37/152 (24%), Positives = 58/152 (38%), Gaps = 31/152 (20%)
Query: 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLK 428
L GPPG GKT+LA+++AK G ++ +S + Y+G R+ + +
Sbjct: 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSEL---------VSKYVGESEKRLRELFE 51
Query: 429 RAKRSNP-LLLLDEIDKMGSD-------LRGDPSAALLEVLDPAQNSSFVDHYLEVEYDL 480
AK+ P ++ +DEID + LL LD + L
Sbjct: 52 AAKKLAPCVIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTS------------SL 99
Query: 481 SDVMFIMTANTLNIPLP--LMDRMEIIRIAGY 510
S V+ I N + P L R + I
Sbjct: 100 SKVIVIAATNRPDKLDPALLRGRFDRIIEFPL 131
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases..
Length = 151
Score = 72.6 bits (178), Expect = 4e-13
Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 24/164 (14%)
Query: 348 KERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQ---YVRMSLGGVYD 404
+ A++ + L GPPG GKT+LA++IA R ++ ++ + +
Sbjct: 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLE 60
Query: 405 EADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPA 464
+ ++ + K +L +DEID + ALL VL
Sbjct: 61 GLVVAELFGHFL-----VRLLFELAEKAKPGVLFIDEIDSLSRGA----QNALLRVL--- 108
Query: 465 QNSSFVDHYLEVEYDLSDVMFIMTANTLN---IPLPLMDRMEII 505
+ ++ D +V I N + L DR++I
Sbjct: 109 ------ETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIR 146
>gnl|CDD|32634 COG2802, COG2802, Uncharacterized protein, similar to the
N-terminal domain of Lon protease [General function
prediction only].
Length = 221
Score = 72.3 bits (177), Expect = 5e-13
Identities = 42/198 (21%), Positives = 82/198 (41%), Gaps = 11/198 (5%)
Query: 29 PLLPLRDIVVFPYMIVPLFVGREKSVRALDEAMNSHKKI-ILVTQMNSNDENPIASSVYR 87
PL PL V+ P ++PL + + + + + ++ +++ + +
Sbjct: 13 PLFPLPGAVLLPGGLLPLNIFEPRYLAMVRTCLAEGRRFGVVLIDRGREVGGGLPPELSD 72
Query: 88 IGTIVDIVQILRLPDGTVKILVEGSVRARIVEYI-EREDFLEAITQVLPDPTEDPVELEA 146
+G + I + L DG ILV G R R++E + + + + A PD DP E
Sbjct: 73 VGCLARITEFEELGDGRYLILVRGGQRFRVLEELADDDPYRRARVPFWPDLPSDPDGAEE 132
Query: 147 LSRSVIAEFSNYIKLNKKISPEVIGITSQIEGFSK-----LADVIAANLSIKVAERQKIL 201
+ R + A + + + + + E + + LA+ + L AE+Q +L
Sbjct: 133 VDRRLDALLMRAA----RAYLQRLELLADWESYERASNADLANRLYMLLPFDPAEKQALL 188
Query: 202 EAVSVKERLEMLLVFMES 219
EA + R E L+ +E
Sbjct: 189 EAPDLPTRAERLIRLLEQ 206
>gnl|CDD|31058 COG0714, COG0714, MoxR-like ATPases [General function prediction
only].
Length = 329
Score = 67.1 bits (163), Expect = 2e-11
Identities = 51/213 (23%), Positives = 81/213 (38%), Gaps = 41/213 (19%)
Query: 319 PWDKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVG 378
+ + L L++ G E+V E + L V+ GPPGVG
Sbjct: 4 IMAPLERVAEILGKIRSELEKVVVGDEEVIELALLALLAGGHVL--------LEGPPGVG 55
Query: 379 KTSLAQSIAKATGRQYVRMS----------LGGVYDEADIRGHRRTYIGSMPGRIIQSLK 428
KT LA+++A+A G +VR+ LG A + +PG + ++
Sbjct: 56 KTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRF--VPGPLFAAV- 112
Query: 429 RAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSD-VMFIM 487
+LLLDEI++ +++ ALLE L+ Q V L + I
Sbjct: 113 -----RVILLLDEINRAPPEVQ----NALLEALEERQ----VTVPGLTTIRLPPPFIVIA 159
Query: 488 TANTLN------IPLPLMDRMEIIRIAGYTEEE 514
T N +P L+DR + Y + E
Sbjct: 160 TQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSE 192
>gnl|CDD|30812 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational
modification, protein turnover, chaperones].
Length = 494
Score = 61.0 bits (147), Expect = 1e-09
Identities = 57/265 (21%), Positives = 103/265 (38%), Gaps = 30/265 (11%)
Query: 339 QDHFGLEKVKE---RIIEYLAVQMRVIKNKGL----ILCFVGPPGVGKTSLAQSIAKATG 391
D GLE+ KE IE + + + GL + GPPG GKT LA+++A +
Sbjct: 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR 301
Query: 392 RQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPL-LLLDEIDKMGSDLR 450
+++ + + + ++G I + ++A++ P + +DEID + S
Sbjct: 302 SRFISVKGSELLSK---------WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRG 352
Query: 451 GDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLNIPLPLMDRM----EIIR 506
+ V+ + +E V+ I N + P + R +I
Sbjct: 353 PSEDGSGRRVV-----GQLLTELDGIE-KAEGVLVIAATNRPDDLDPALLRPGRFDRLIY 406
Query: 507 IAGYTEEEKLQIAKNHL--VKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERA 564
+ EE+L+I K HL K L E +E I++G I EA + + A
Sbjct: 407 VPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREA 466
Query: 565 LM-KIARKAVTKIVKNSDTTVSINE 588
++ +K +V+ E
Sbjct: 467 RRREVTLDDFLDALKKIKPSVTYEE 491
>gnl|CDD|31936 COG1750, COG1750, Archaeal serine proteases [General function
prediction only].
Length = 579
Score = 58.9 bits (142), Expect = 6e-09
Identities = 31/85 (36%), Positives = 44/85 (51%)
Query: 693 GPSAGIAMATAIVSIMTCIPVYKNVAMTGELTLRGRVLPIGGLKEKLLAALRAGVTKVLI 752
GPSAG M AI + + + K+V MTG + G + P+GG+ EKL AA +AG LI
Sbjct: 114 GPSAGGYMTVAIYAALMGWSIRKDVMMTGMINPDGSIGPVGGILEKLEAAAKAGAKIFLI 173
Query: 753 PEENIKDLMDIPENVKNGLEIIPVS 777
P + + GL++I V
Sbjct: 174 PVGQRIVVDLVEYGKSLGLKVIEVG 198
>gnl|CDD|33283 COG3480, SdrC, Predicted secreted protein containing a PDZ domain
[Signal transduction mechanisms].
Length = 342
Score = 52.3 bits (125), Expect = 6e-07
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 692 DGPSAGIAMATAIVSIMTCIPVYKN--VAMTGELTLRGRVLPIGGLKEKLLAALRAGVTK 749
GPSAG+ + AI +T + +A TG + + G+V PIGG+ +K++AA +AG
Sbjct: 233 GGPSAGLMFSLAIYDQLTKGDLTGGRFIAGTGTIEVDGKVGPIGGIDQKVVAAAKAGADV 292
Query: 750 VLIPEENIKDLMDIP---------ENVKNGLEIIPVSFMGEVL 783
+P +N + M E++ ++I+PV + E L
Sbjct: 293 FFVPADNCAEEMSDSNYDEALVAAEDLSTAMKIVPVKTLQEAL 335
>gnl|CDD|31265 COG1066, Sms, Predicted ATP-dependent serine protease
[Posttranslational modification, protein turnover,
chaperones].
Length = 456
Score = 52.1 bits (125), Expect = 6e-07
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 8/93 (8%)
Query: 692 DGPSAGIAMATAIVSIMTCIPVYKNVAMTGELTLRGRVLPIGGLKEKLLAALRAGVTKVL 751
P+A +A+A A+VS P+ ++ + GE+ L G + P+ + +L A + G + +
Sbjct: 367 TEPAADLAVALALVSSFRNRPLPQDTVVFGEVGLSGEIRPVPRGERRLKEAAKLGFKRAI 426
Query: 752 IPEENIKDLMDIPENVKNGLEIIPVSFMGEVLK 784
+P+ NI + G+++I VS + E L+
Sbjct: 427 VPKGNIP--------LPEGIKVIGVSTLAEALE 451
>gnl|CDD|36269 KOG1051, KOG1051, KOG1051, Chaperone HSP104 and related
ATP-dependent Clp proteases [Posttranslational
modification, protein turnover, chaperones].
Length = 898
Score = 47.7 bits (113), Expect = 1e-05
Identities = 63/327 (19%), Positives = 126/327 (38%), Gaps = 35/327 (10%)
Query: 181 KLADVIAANLSIK-VAERQKILEAVSVKERLEMLLVFMESEISVLQVEKRIRSRVKRQME 239
L D AA + + + + V +L+ + ++ + + ++ +
Sbjct: 401 DLEDEAAALVKSQAESLPPWLQNLERVDIKLQDEISELQKKWNQALHKRPSLESLAPSKP 460
Query: 240 KTQREYYLHEQMKAIQKELDNGEEGRDEISDFEARISKIRLSKEAR------EKALSELQ 293
Q + +++ +EL + D S ++E LSE
Sbjct: 461 TQQPLSASVDSERSVIEELKLKKNSLDRNSLLAKAHRPNDYTRETDLRYGRIPDELSEKS 520
Query: 294 KLRQMNPLSAESSVVRNYLDWLLGVPWDKKSKTKKNLDFAI------RILDQDHFGLEKV 347
Q V R G+P D+ ++ + + R++ QD + +
Sbjct: 521 NDNQGGESDISEVVSRW-----TGIPVDRLAEAEAERLKKLEERLHERVIGQDE-AVAAI 574
Query: 348 KERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAK---ATGRQYVRMSLGGVYD 404
I A N F+GP GVGKT LA+++A+ + ++R+ + +
Sbjct: 575 AAAIRRSRAGLKD--PNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQE 632
Query: 405 EADIRGHRRTYIGS-MPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDP 463
+ + G Y+G G++ +++KR R ++L +EI+K D+ LL++LD
Sbjct: 633 VSKLIGSPPGYVGKEEGGQLTEAVKR--RPYSVVLFEEIEKAHPDVLN----ILLQLLDR 686
Query: 464 AQNSSFVDHYLEVEYDLSDVMFIMTAN 490
+ D + E D + +FIMT+N
Sbjct: 687 GR---LTDSHGR-EVDFKNAIFIMTSN 709
>gnl|CDD|37381 KOG2170, KOG2170, KOG2170, ATPase of the AAA+ superfamily [General
function prediction only].
Length = 344
Score = 47.2 bits (112), Expect = 2e-05
Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 24/162 (14%)
Query: 337 LDQDHFGLEKVKERIIEYLAVQMRVIK-NKGLILCFVGPPGVGKTSLAQSIAKATGRQ-- 393
L + FG K+ ++ L K L+L F G G GK +A+ IA+ R
Sbjct: 80 LARALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGL 139
Query: 394 ---YVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLR 450
+V + Y + R+ +++ +RS L + DE+DK+
Sbjct: 140 RSPFVHHFV-ATLHFPHAS-KIEDYKEELKNRVRGTVQACQRS--LFIFDEVDKLPP--- 192
Query: 451 GDPSAALLEVLDPAQNSSFVDHYLEV-EYDLSDVMFIMTANT 491
LL+VL P F+D+Y +V D +FI +N
Sbjct: 193 -----GLLDVLKP-----FLDYYPQVSGVDFRKAIFIFLSNA 224
>gnl|CDD|31416 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 368
Score = 46.5 bits (110), Expect = 3e-05
Identities = 54/239 (22%), Positives = 98/239 (41%), Gaps = 54/239 (22%)
Query: 303 AESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKER---IIEYLAVQM 359
+ ++ + ++L P ++ + ++ D G E+ K + I+EYL
Sbjct: 91 SGGGIITSTTIFVLETPREEDREIISDITL------DDVIGQEEAKRKCRLIMEYLENPE 144
Query: 360 RVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSM 419
R + F GPPG GKT +A+++A + + + E ++G
Sbjct: 145 RFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE---------HVGDG 195
Query: 420 PGRIIQSLKRAKRSNP-LLLLDEIDKMGSD-----LRGDPSA---ALL------------ 458
RI + +RA+++ P ++ +DE+D + D LRGD S ALL
Sbjct: 196 ARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGV 255
Query: 459 ---------EVLDPAQNSSFVDHYLEVEYDLSD---VMFIMTANTLNIPLPLMDRMEII 505
E+LDPA S F + E+E+ L + + I+ PLP+ + +
Sbjct: 256 VTIAATNRPELLDPAIRSRFEE---EIEFKLPNDEERLEILEYYAKKFPLPVDADLRYL 311
>gnl|CDD|30951 COG0606, COG0606, Predicted ATPase with chaperone activity
[Posttranslational modification, protein turnover,
chaperones].
Length = 490
Score = 46.4 bits (110), Expect = 3e-05
Identities = 46/177 (25%), Positives = 71/177 (40%), Gaps = 18/177 (10%)
Query: 624 GEILTVEGVIMPGKGEITITGNLKEIMKESILAASSYVRSKATTFGI-IPSAFNEINIHV 682
+ VE I G TI G +KES VR+ T G P+ IN+
Sbjct: 2 APPVEVEVDISNGLPGFTIVGLPDTAVKESR----ERVRAALTNSGFEFPAKRITINL-- 55
Query: 683 HVPEGATPKDGPSAGIAMATAIVSIMTCIP--VYKNVAMTGELTLRGRVLPIGGLKEKLL 740
P PK+G + +A I++ +P GEL+L G + P+GG+ L
Sbjct: 56 -APAD-LPKEGSRFDLPIALGILAASGQLPADALILYEFLGELSLDGLLRPVGGVLPAAL 113
Query: 741 AALRAGVTKVLIPEENIKDLMDIPENVKNGLEIIPVSFMGEVLKHALLRMPDPLESE 797
AA G +++P+EN ++ I GL + ++ EV+ L L
Sbjct: 114 AAKEKGKRGLIVPKENAEEASLIG-----GLPVYGARYLEEVVNF--LEGKLRLPIP 163
>gnl|CDD|30888 COG0542, ClpA, ATPases with chaperone activity, ATP-binding subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 786
Score = 46.5 bits (110), Expect = 3e-05
Identities = 89/434 (20%), Positives = 155/434 (35%), Gaps = 118/434 (27%)
Query: 184 DVIAANLSIKVAERQKILEAVSVKERLEMLLVFMESEISVLQVEKRIRSRVKRQMEKTQR 243
D++ + E K E ++ L L E E L+ E+ + + +
Sbjct: 384 DLLDEAGARVRLEIDKPEELDELERELAQL----EIEKEALEREQDEKEKKLIDEIIKLK 439
Query: 244 EYYLHEQMKAIQKELDNGEEGRDEISDFEARISKI---RLSKEAREKALSELQKLR---- 296
E + E K ++ E+D D+I++ AR + I +L ++ +EK L+ ++L+
Sbjct: 440 EGRIPELEKELEAEVD-----EDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVI 494
Query: 297 -QMNPLSAESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYL 355
Q + A S +R + GL I +L
Sbjct: 495 GQDEAVEAVSDAIR-----------------------------RARAGLGDPNRPIGSFL 525
Query: 356 AVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKA---TGRQYVRMSLGGVYDEADIRGHR 412
F+GP GVGKT LA+++A+A + +R+ + ++ +
Sbjct: 526 ---------------FLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSR-- 568
Query: 413 RTYIGSMPGRI----IQSLKRAKRSNP--LLLLDEIDKMGSDLRGDPSAALLEVLDPAQN 466
IG+ PG + L A R P ++LLDEI+K D+ LL+VLD +
Sbjct: 569 --LIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDV----FNLLLQVLD---D 619
Query: 467 SSFVDHYLEVEYDLSDVMFIMTAN---------TLNIPLPLMDRM--------------- 502
D D + + IMT+N + +
Sbjct: 620 GRLTDGQ-GRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPE 678
Query: 503 ------EIIRIAGYTEEEKLQIAKNHL--VKKVLTEHALKQEECCISDGVLLDII-RLFT 553
EII ++E +I L + K L E + E +SD + + +
Sbjct: 679 FLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLE---LSDEAKDFLAEKGYD 735
Query: 554 HEAGVRSFERALMK 567
E G R RA+ +
Sbjct: 736 PEYGARPLRRAIQQ 749
Score = 35.7 bits (82), Expect = 0.048
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 343 GLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402
G ++ R I+ L R KN + VG PGVGKT++ + +A+ V SL
Sbjct: 174 GRDEEIRRTIQIL---SRRTKNNPV---LVGEPGVGKTAIVEGLAQRIVNGDVPESLKDK 227
Query: 403 ----YDEADIRGHRRTYIGSMPGRIIQSLKRAKRS-NPLLLLDEIDKM 445
D + + Y G R+ LK ++S N +L +DEI +
Sbjct: 228 RIYSLDLGSLVAGAK-YRGEFEERLKAVLKEVEKSKNVILFIDEIHTI 274
>gnl|CDD|34868 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 44.7 bits (105), Expect = 1e-04
Identities = 41/167 (24%), Positives = 69/167 (41%), Gaps = 35/167 (20%)
Query: 373 GPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYI-GSMPGRII---QSLK 428
G PGVGKTSL ++A+ TG++ +R++L D D+ G + + G
Sbjct: 1550 GSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFG---SDLPVEEGGEFRWMDAPFL 1606
Query: 429 RAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMT 488
A R +LLDEI+ S ++LE L+ + +DH E D F +
Sbjct: 1607 HAMRDGGWVLLDEINLA--------SQSVLEGLN-----ACLDHRREAYIPELDKTFDVH 1653
Query: 489 ANTL---------------NIPLPLMDRMEIIRIAGYTEEEKLQIAK 520
N +P ++R ++++ G T ++ IA
Sbjct: 1654 PNFRVFAAQNPQDQGGGRKGLPKSFLNRFSVVKMDGLTTDDITHIAN 1700
Score = 31.2 bits (70), Expect = 1.1
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 359 MRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGS 418
MR L GP GKTS+ +A+ TG ++VR++ ++ D++ + TY+
Sbjct: 881 MRAASLSNFPLLIQGPTSSGKTSMILYLARETGHKFVRIN---NHEHTDLQEYIGTYVTD 937
Query: 419 MPGRII---QSLKRAKRSNPLLLLDEIDKMGSDL 449
G + L A R ++LDE++ +D+
Sbjct: 938 DDGSLSFKEGVLVEALRRGYWIVLDELNLAPTDV 971
Score = 28.1 bits (62), Expect = 9.0
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 359 MRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRG 410
MR I N L VG GVGKTSL + +A G++ + D D+ G
Sbjct: 1844 MRCI-NMNWPLILVGDTGVGKTSLLRFLASIFGQEMTLFNCNSDTDVMDLLG 1894
>gnl|CDD|31415 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 406
Score = 44.8 bits (106), Expect = 1e-04
Identities = 65/271 (23%), Positives = 109/271 (40%), Gaps = 52/271 (19%)
Query: 343 GLEKVKERIIEY---------LAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQ 393
GL++ + I E L ++ + KG++L GPPG GKT LA+++A T
Sbjct: 155 GLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLL--YGPPGTGKTLLAKAVANQTDAT 212
Query: 394 YVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNP-LLLLDEIDKMGSDLRGD 452
++R+ + + YIG + + + A+ P ++ +DEID +G+ R D
Sbjct: 213 FIRVVGSELVQK---------YIGEGARLVRELFELAREKAPSIIFIDEIDAIGAK-RFD 262
Query: 453 PSAA--------LLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLNIPLPLM----- 499
+ +LE+L Q F +V IM N +I P +
Sbjct: 263 SGTSGDREVQRTMLELL--NQLDGF--------DPRGNVKVIMATNRPDILDPALLRPGR 312
Query: 500 -DRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGV 558
DR I EE + +I K H K L + + +++G ++ EAG+
Sbjct: 313 FDR--KIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGM 370
Query: 559 RSFER----ALMKIARKAVTKIVKNSDTTVS 585
+ M+ KAV K+VK S
Sbjct: 371 FAIRERRDEVTMEDFLKAVEKVVKKKKKLSS 401
>gnl|CDD|32437 COG2256, MGS1, ATPase related to the helicase subunit of the
Holliday junction resolvase [DNA replication,
recombination, and repair].
Length = 436
Score = 44.8 bits (106), Expect = 1e-04
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 22/89 (24%)
Query: 360 RVIKNKGLI-LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGS 418
R ++ L + GPPG GKT+LA+ IA T + +S D+R
Sbjct: 41 RAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALS-AVTSGVKDLR--------- 90
Query: 419 MPGRIIQSLKRAKRSN-----PLLLLDEI 442
+ ++ A+++ +L LDEI
Sbjct: 91 ------EIIEEARKNRLLGRRTILFLDEI 113
>gnl|CDD|35953 KOG0734, KOG0734, KOG0734, AAA+-type ATPase containing the
peptidase M41 domain [Posttranslational modification,
protein turnover, chaperones].
Length = 752
Score = 44.6 bits (105), Expect = 1e-04
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 12/84 (14%)
Query: 365 KGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRII 424
KG++L VGPPG GKT LA+++A G + S G +DE ++G R+
Sbjct: 338 KGVLL--VGPPGTGKTLLARAVAGEAGVPFFYAS-GSEFDE--------MFVGVGARRVR 386
Query: 425 QSLKRAKRSNP-LLLLDEIDKMGS 447
AK P ++ +DEID +G
Sbjct: 387 DLFAAAKARAPCIIFIDEIDAVGG 410
>gnl|CDD|39857 KOG4658, KOG4658, KOG4658, Apoptotic ATPase [Signal transduction
mechanisms].
Length = 889
Score = 43.8 bits (103), Expect = 2e-04
Identities = 35/186 (18%), Positives = 67/186 (36%), Gaps = 15/186 (8%)
Query: 205 SVKERLEML---LVFMESEISVLQVEKRIRSRVKRQMEKTQREYYLHEQMKAIQKELDNG 261
+ L L ++S + L ++ R E YL E + + +
Sbjct: 25 GKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIE 84
Query: 262 EEGRDEISDFEARISKIRLSKEAREKALSELQKLRQMNPLSAESSVVRNYL-DWLLGVPW 320
+ D +S ++ L K +S+ K + +S V + + V
Sbjct: 85 RKANDLLSTRSVERQRLCLCGFCS-KNVSDSYKYGKR--VSKVLREVESLGSKGVFEVVG 141
Query: 321 DKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKT 380
+ +K I+ + GLE + E++ L +++ I+ G GVGKT
Sbjct: 142 ESLDPREKVETRPIQ--SESDVGLETMLEKLWNRL------MEDDVGIVGIYGMGGVGKT 193
Query: 381 SLAQSI 386
+LA+ I
Sbjct: 194 TLARQI 199
>gnl|CDD|35950 KOG0731, KOG0731, KOG0731, AAA+-type ATPase containing the
peptidase M41 domain [Posttranslational modification,
protein turnover, chaperones].
Length = 774
Score = 43.5 bits (102), Expect = 2e-04
Identities = 64/273 (23%), Positives = 112/273 (41%), Gaps = 47/273 (17%)
Query: 323 KSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKN------------KGLILC 370
KS K + + +D G+++ KE ++E+ ++ +KN KG++L
Sbjct: 295 KSYKKFKNEGNTGVKFKDVAGVDEAKEELMEF----VKFLKNPEQYQELGAKIPKGVLL- 349
Query: 371 FVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRA 430
VGPPG GKT LA++IA G + +S G + E ++G R+ A
Sbjct: 350 -VGPPGTGKTLLAKAIAGEAGVPFFSVS-GSEFVE--------MFVGVGASRVRDLFPLA 399
Query: 431 KRSNP-LLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYD----LSDVMF 485
+++ P ++ +DEID +G G + + + L VE D V+
Sbjct: 400 RKNAPSIIFIDEIDAVGRKRGG----KGTGGGQDEREQTL--NQLLVEMDGFETSKGVIV 453
Query: 486 IMTANTLNIPLPL------MDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECC 539
+ N +I P DR I+I + + I K HL KK L + + +
Sbjct: 454 LAATNRPDILDPALLRPGRFDR--QIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLA 511
Query: 540 I-SDGVLLDIIRLFTHEAGVRSFERALMKIARK 571
+ G + +EA + + + L +I K
Sbjct: 512 SLTPGFSGADLANLCNEAALLAARKGLREIGTK 544
>gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter
nucleotide-binding domain; ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 157
Score = 43.4 bits (102), Expect = 3e-04
Identities = 38/136 (27%), Positives = 54/136 (39%), Gaps = 17/136 (12%)
Query: 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPG-- 421
G I+ VGP G GK++L ++IA + + G R IG +P
Sbjct: 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLS 82
Query: 422 -----RIIQSLKRAKRSNP-LLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSS----FVD 471
R+ +L RA NP LLLLDE S L LLE+L V
Sbjct: 83 GGQRQRV--ALARALLLNPDLLLLDEPT---SGLDPASRERLLELLRELAEEGRTVIIVT 137
Query: 472 HYLEVEYDLSDVMFIM 487
H E+ +D + ++
Sbjct: 138 HDPELAELAADRVIVL 153
>gnl|CDD|110677 pfam01695, IstB, IstB-like ATP binding protein. This protein
contains an ATP/GTP binding P-loop motif. It is found
associated with IS21 family insertion sequences. The
function of this protein is unknown, but it may perform
a transposase function.
Length = 178
Score = 42.6 bits (101), Expect = 4e-04
Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 36/108 (33%)
Query: 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLK 428
L +GPPGVGKT LA ++ G Q R G+ + P +++ LK
Sbjct: 50 LLLLGPPGVGKTHLACAL----GHQACR------------AGYSVLFT-RTP-DLVEQLK 91
Query: 429 RAKRSN------------PLLLLDEIDKMGSDLRGDPSAA--LLEVLD 462
RA+ LL+LD+I L AA L E++
Sbjct: 92 RARGDGRLARTLQRLAKADLLILDDI----GYLPLSQEAAHLLFELIS 135
>gnl|CDD|37019 KOG1808, KOG1808, KOG1808, AAA ATPase containing von Willebrand
factor type A (vWA) domain [General function prediction
only].
Length = 1856
Score = 42.3 bits (99), Expect = 5e-04
Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 17/172 (9%)
Query: 339 QDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMS 398
H+ + ++ LA R I + + GP GKTS+ + +A+ATG+ VR++
Sbjct: 416 ATHYIITPRVQK---NLADLARAISSGKFPILLQGPTSSGKTSIIKELARATGKNIVRIN 472
Query: 399 LGGVYDEADIRGHRRTYIGSMPGRIIQS---LKRAKRSNPLLLLDEIDKMGSDLRGDPSA 455
++ D++ + TY+ G ++ L +A R+ ++LDE++ D+
Sbjct: 473 N---HEHTDLQEYIGTYVADDNGDLVFREGVLVQALRNGDWIVLDELNLAPHDVLE---- 525
Query: 456 ALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLNIPLPLMDRMEIIRI 507
AL +LD + + V+ ++F T N P R + R
Sbjct: 526 ALNRLLDDNRELFIPETQRLVKAHPEFMLFA----TQNPPGTYGGRKILSRA 573
Score = 33.1 bits (75), Expect = 0.34
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 373 GPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGH 411
G G GKTSL ++ + TG+ +R++L D AD+ G
Sbjct: 1053 GESGSGKTSLVLALGRLTGKWTIRLNLSDQTDLADLFGS 1091
>gnl|CDD|32436 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA
replication, recombination, and repair].
Length = 332
Score = 42.1 bits (99), Expect = 7e-04
Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 42/195 (21%)
Query: 340 DHFGLEKVKERIIEYLAVQMRVIKNKGLIL---CFVGPPGVGKTSLAQSIAKATGRQYVR 396
+ G EKVKE+ L + ++ K +G L GPPG+GKT+LA IA G ++
Sbjct: 27 EFIGQEKVKEQ----LQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN-LK 81
Query: 397 MSLGGVYDEA-DIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSA 455
++ G ++ D+ I+ +L+ +L +DEI ++
Sbjct: 82 ITSGPALEKPGDLAA------------ILTNLEE----GDVLFIDEIHRLSP-------- 117
Query: 456 ALLEVLDPAQNSSFVDHYL-------EVEYDLSDVMFI-MTANTLNIPLPLMDRMEII-R 506
A+ EVL PA +D + + DL I T + PL DR II R
Sbjct: 118 AVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQR 177
Query: 507 IAGYTEEEKLQIAKN 521
+ YT EE +I K
Sbjct: 178 LEFYTVEELEEIVKR 192
>gnl|CDD|30813 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational
modification, protein turnover, chaperones].
Length = 596
Score = 39.5 bits (92), Expect = 0.004
Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 24/135 (17%)
Query: 323 KSKTKKNLDFAIRILDQDHFGLEKVKERIIE----------YLAVQMRVIKNKGLILCFV 372
KSK K L+ +++ D G+++ KE + E Y A+ ++ K L V
Sbjct: 134 KSKAKLYLEDQVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLL----V 189
Query: 373 GPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKR 432
GPPG GKT LA+++A G + +S G + E ++G R+ ++AK+
Sbjct: 190 GPPGTGKTLLAKAVAGEAGVPFFSIS-GSDFVEM--------FVGVGASRVRDLFEQAKK 240
Query: 433 SNP-LLLLDEIDKMG 446
+ P ++ +DEID +G
Sbjct: 241 NAPCIIFIDEIDAVG 255
>gnl|CDD|35945 KOG0726, KOG0726, KOG0726, 26S proteasome regulatory complex,
ATPase RPT2 [Posttranslational modification, protein
turnover, chaperones].
Length = 440
Score = 39.5 bits (92), Expect = 0.004
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 12/91 (13%)
Query: 358 QMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIG 417
+M + KG+IL G PG GKT LA+++A T ++R+ + + Y+G
Sbjct: 213 EMGIKPPKGVILY--GEPGTGKTLLAKAVANQTSATFLRVVGSELIQK---------YLG 261
Query: 418 SMPGRIIQSLKRAKRSNP-LLLLDEIDKMGS 447
P + + + A+ P ++ +DEID +G+
Sbjct: 262 DGPKLVRELFRVAEEHAPSIVFIDEIDAIGT 292
>gnl|CDD|177083 CHL00181, cbbX, CbbX; Provisional.
Length = 287
Score = 38.9 bits (91), Expect = 0.006
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 13/75 (17%)
Query: 322 KKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAV----QMR-----VIKNKGLILCFV 372
+K++ ++ LD ILD++ GL VK RI E A+ ++R N GL + F
Sbjct: 10 EKTQIQEVLD----ILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFT 65
Query: 373 GPPGVGKTSLAQSIA 387
G PG GKT++A +A
Sbjct: 66 GSPGTGKTTVALKMA 80
Score = 28.1 bits (63), Expect = 9.7
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 17/113 (15%)
Query: 208 ERLEMLLVFMESEISVLQVEKRIRSRVKRQMEKTQREYYLHEQMKAIQKELDNGEEGRDE 267
E +E+LL ME++ L V I + K +M+K +E + + N + D
Sbjct: 146 EAIEILLQVMENQRDDLVV---IFAGYKDRMDK------FYESNPGLSSRIANHVDFPDY 196
Query: 268 ISDFEARISKI-------RLSKEAREKALSELQKLRQMNPLSAESSVVRNYLD 313
+ +I+KI +L+ EA EKAL + K R PL A + VRN LD
Sbjct: 197 TPEELLQIAKIMLEEQQYQLTPEA-EKALLDYIKKRMEQPLFANARSVRNALD 248
>gnl|CDD|177080 CHL00176, ftsH, cell division protein; Validated.
Length = 638
Score = 38.9 bits (91), Expect = 0.006
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 28/91 (30%)
Query: 365 KGLILCFVGPPGVGKTSLAQSIA--------KATGRQYVRMSLGGVYDEADIRGHRRTYI 416
KG++ VGPPG GKT LA++IA +G ++V M +G +
Sbjct: 217 KGVL--LVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVG---------------V 259
Query: 417 GSMPGRIIQSLKRAKRSNP-LLLLDEIDKMG 446
G+ R+ K+AK ++P ++ +DEID +G
Sbjct: 260 GA--ARVRDLFKKAKENSPCIVFIDEIDAVG 288
>gnl|CDD|35955 KOG0736, KOG0736, KOG0736, Peroxisome assembly factor 2 containing
the AAA+-type ATPase domain [Posttranslational
modification, protein turnover, chaperones].
Length = 953
Score = 37.7 bits (87), Expect = 0.012
Identities = 68/316 (21%), Positives = 121/316 (38%), Gaps = 70/316 (22%)
Query: 147 LSRSVIAEFSNYIKLNKKISPEVIGITSQIEGFSKLADVIAANL-SIKV-----AERQKI 200
L + + SN V+ TS IE AD+ + L I+V +R +I
Sbjct: 514 LLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLP--ADIQSLFLHEIEVPALSEEQRLEI 571
Query: 201 LEAVSVKERLEMLLVFMESEISVLQVEKRIRSRVKRQMEKTQREYYLHEQMKAIQKELDN 260
L+ L ++++ Q+ ++ +E L + + K L
Sbjct: 572 LQWYLNHLPLN-------QDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAG 624
Query: 261 GEEGRDEISDFEARISKIRLSKEAREKALSELQKLRQMNPLSAESSVVRNYLDWLLGVPW 320
G + DE + L++E +KALS LQK + + A + N V W
Sbjct: 625 GLQEEDEGEL---CAAGFLLTEEDFDKALSRLQK-EFSDAIGAPK--IPN-------VSW 671
Query: 321 DKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQM--------RVIKNKGLILCFV 372
D D GLE+VK I++ + + + + K G++L
Sbjct: 672 D------------------DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILL--Y 711
Query: 373 GPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHR--RTYIGSMPGRIIQSLKRA 430
GPPG GKT LA+++A ++ ++G Y+G + + +RA
Sbjct: 712 GPPGTGKTLLAKAVATECSLNFL-----------SVKGPELLNMYVGQSEENVREVFERA 760
Query: 431 KRSNP-LLLLDEIDKM 445
+ + P ++ DE+D +
Sbjct: 761 RSAAPCVIFFDELDSL 776
Score = 35.4 bits (81), Expect = 0.059
Identities = 62/294 (21%), Positives = 116/294 (39%), Gaps = 47/294 (15%)
Query: 373 GPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKR 432
GPPG GKT++ +++A G + + + E+ H T ++ RA+R
Sbjct: 438 GPPGSGKTTVVRAVASELGLHLLEVDCYELVAES--ASHTET-------KLQAIFSRARR 488
Query: 433 SNPL-LLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSD---VMFIMT 488
+P L L +D +G D G A LL+V+ H L E V+ + T
Sbjct: 489 CSPAVLFLRNLDVLGIDQDGGEDARLLKVI---------RHLLSNEDFKFSCPPVIVVAT 539
Query: 489 ANTL-NIPLPLMDRM-EIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLL 546
+++ ++P + I + +EE++L+I + +L L + ++ + G
Sbjct: 540 TSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSF 599
Query: 547 -DIIRLFTH----------EAGVRSFERALMKIARKAVTKIVKNSDTTVSIN--ENNLQD 593
D+ L H G+ + + A ++ D +++ + D
Sbjct: 600 GDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSD 659
Query: 594 YLGVPRYKYGKIEGEDQVGIVTGLAWTEVGGEILTVEGVIMPGKGEITITGNLK 647
+G P K + +D V GL EV EIL + + +P K + L+
Sbjct: 660 AIGAP--KIPNVSWDD----VGGLE--EVKTEIL--DTIQLPLKHPELFSSGLR 703
>gnl|CDD|144489 pfam00910, RNA_helicase, RNA helicase. This family includes RNA
helicases thought to be involved in duplex unwinding
during viral RNA replication. Members of this family are
found in a variety of single stranded RNA viruses.
Length = 105
Score = 37.6 bits (88), Expect = 0.014
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVY 403
+ GPPG GK++LA+ +A+A VY
Sbjct: 1 IWLYGPPGCGKSTLAKYLARALLDHLGLPKKDSVY 35
>gnl|CDD|31673 COG1484, DnaC, DNA replication protein [DNA replication,
recombination, and repair].
Length = 254
Score = 36.9 bits (85), Expect = 0.024
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEA-DIRGHRRTYIGSMPGR 422
+G L +GPPGVGKT LA +I + + + D ++ GR
Sbjct: 103 ERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDE------GR 156
Query: 423 IIQSLKRAKRSNPLLLLDEI 442
+ + L R + LL++D+I
Sbjct: 157 LEEKLLRELKKVDLLIIDDI 176
>gnl|CDD|73174 COG0470, HolB, ATPase involved in DNA replication [DNA replication,
recombination, and repair].
Length = 325
Score = 36.9 bits (84), Expect = 0.026
Identities = 36/187 (19%), Positives = 72/187 (38%), Gaps = 14/187 (7%)
Query: 349 ERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADI 408
+ ++ L VQ L F GPPGVGKT+ A ++AK + G+
Sbjct: 7 QEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPT----GLLPCGHC 62
Query: 409 RGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEV--LDPAQN 466
R + G+ P L + ++++++ ++ L P +V +D A
Sbjct: 63 RSCKLIPAGNHPD--FLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADK 120
Query: 467 SSFVDHY----LEVEYDLSDVMFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKN 521
+ D +E + FI+ N + I + R + IR + E + ++
Sbjct: 121 LT-EDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQRIRFKPPSRLEAIAWLED 179
Query: 522 HLVKKVL 528
++++
Sbjct: 180 QGLEEIA 186
>gnl|CDD|35956 KOG0737, KOG0737, KOG0737, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 386
Score = 36.8 bits (85), Expect = 0.027
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 12/82 (14%)
Query: 334 IRILDQDHFGLEKVKERIIEYLAVQMR----------VIKNKGLILCFVGPPGVGKTSLA 383
I + D GLE+VK+ + E + + +R + KG++L GPPG GKT LA
Sbjct: 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILL--YGPPGTGKTMLA 144
Query: 384 QSIAKATGRQYVRMSLGGVYDE 405
++IAK G ++ +S+ + +
Sbjct: 145 KAIAKEAGANFINVSVSNLTSK 166
>gnl|CDD|39361 KOG4159, KOG4159, KOG4159, Predicted E3 ubiquitin ligase
[Posttranslational modification, protein turnover,
chaperones].
Length = 398
Score = 36.5 bits (84), Expect = 0.030
Identities = 38/224 (16%), Positives = 71/224 (31%), Gaps = 41/224 (18%)
Query: 14 EDESKDRCGADGIIYPLLPLRDIVVFPYMIVPLFVGREKSVRALDEAMNSHKKIILVTQM 73
E+ES C + PL P+ + FP + PL V + + + + K +
Sbjct: 168 EEESSRECES-----PLFPVCT-LAFPEVPCPLQVFEPRYRLMIRRLLETGDKRFGICL- 220
Query: 74 NSNDENPIASSVYRIGTIVDIVQILRLPDGTVKILVEGSVRARIVEYIEREDFLEAITQV 133
S+ + IG I++I ++ L DG + G R R++ + + + + A +
Sbjct: 221 -SDSSKGSGQA-AEIGCILEIRKVESLGDGRSVVDSIGKSRFRVLLFSQTDGYPVADVEY 278
Query: 134 LPDPTEDPVELE------------------ALSRSVIAEFSNYIKLNKKISPEVIGITSQ 175
L D VE SV + ++ P +
Sbjct: 279 LEDRPAVKVEGHDEPETLVELMKEVVKKECLWFESVADPMKGRLLVHFGCMPFLEINFEC 338
Query: 176 IEGFSKLADVIAANLSIKVAERQKILEAVSVKERLEMLLVFMES 219
+E A + + RL+ + M S
Sbjct: 339 LESGP--------------AWCWWKTALLPSEARLKSEFLAMRS 368
>gnl|CDD|35949 KOG0730, KOG0730, KOG0730, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 693
Score = 36.5 bits (84), Expect = 0.031
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 371 FVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRA 430
GPPG GKT LA+++A G ++ + ++ + Y+G I + ++A
Sbjct: 473 LYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSK---------YVGESERAIREVFRKA 523
Query: 431 KRSNP-LLLLDEIDKMGSDLRGDPSAALLEVL 461
++ P ++ DEID + G S VL
Sbjct: 524 RQVAPCIIFFDEIDALAGSRGGSSSGVTDRVL 555
Score = 31.8 bits (72), Expect = 0.84
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 19/78 (24%)
Query: 372 VGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRA- 430
GPPG GKT L +++A G ++ + I PG +L++A
Sbjct: 224 YGPPGTGKTFLVRAVANEYGAFLFLINGPEL-------------ISKFPGETESNLRKAF 270
Query: 431 ----KRSNP-LLLLDEID 443
K P ++ +DE+D
Sbjct: 271 AEALKFQVPSIIFIDELD 288
>gnl|CDD|35870 KOG0651, KOG0651, KOG0651, 26S proteasome regulatory complex,
ATPase RPT4 [Posttranslational modification, protein
turnover, chaperones].
Length = 388
Score = 36.5 bits (84), Expect = 0.033
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 12/82 (14%)
Query: 367 LILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQS 426
L GPPG GKT LA+++A G ++++ + D+ YIG R+I+
Sbjct: 167 KGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK---------YIGE-SARLIRD 216
Query: 427 LKR-AKRSNPL-LLLDEIDKMG 446
+ R A+ P + +DEID +G
Sbjct: 217 MFRYAREVIPCIIFMDEIDAIG 238
>gnl|CDD|144201 pfam00521, DNA_topoisoIV, DNA gyrase/topoisomerase IV, subunit A.
Length = 428
Score = 36.3 bits (85), Expect = 0.036
Identities = 24/151 (15%), Positives = 60/151 (39%), Gaps = 20/151 (13%)
Query: 159 IKLNKKISPEVIGITSQIEGFSKLADVIAANLSIKVAERQKILEAVSVKERLEMLLVFME 218
I+L + PEV+ +++ +KL + N + + + + E+L F+E
Sbjct: 265 IELKRGADPEVV--LNKLYKKTKLQSSFSTNN-LVLFDGGPKYLNLK-----EILKEFLE 316
Query: 219 SEISVLQVEKRIR-SRVKRQMEKTQREYYLHEQMKAIQKELDNGEEGRDEISDFEARISK 277
+ V + K +++ ++ + ++ + + + + + +S+
Sbjct: 317 HRLEVYKRRKEYLLEKLEERLHILEGLLKALNKIDFVIEVIRGSIDLNKAKKELIEELSE 376
Query: 278 I-----------RLSKEAREKALSELQKLRQ 297
I RL+KE EK E+++L +
Sbjct: 377 IQADYLLDMRLRRLTKEEIEKLEKEIEELEK 407
>gnl|CDD|37239 KOG2028, KOG2028, KOG2028, ATPase related to the helicase subunit
of the Holliday junction resolvase [Replication,
recombination and repair].
Length = 554
Score = 36.2 bits (83), Expect = 0.037
Identities = 49/288 (17%), Positives = 90/288 (31%), Gaps = 75/288 (26%)
Query: 323 KSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLI-----------LCF 371
+ + IR + Q E+++ + ++ Q ++ GL+ +
Sbjct: 108 RPHKRALAAEEIRQMLQHKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMIL 167
Query: 372 VGPPGVGKTSLAQSIAK-ATGRQYVRMSLGGVYDE-ADIRGHRRTYIGSMPGRIIQSLKR 429
GPPG GKT+LA+ IA + Y + L + D+R I + +
Sbjct: 168 WGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRD------------IFEQAQN 215
Query: 430 AK---RSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFI 486
K + +L +DEI + + +Q +F
Sbjct: 216 EKSLTKRKTILFIDEIHR----------------FNKSQQDTF----------------- 242
Query: 487 MTANTLNIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVK-KVLTEHALKQEECCISDGVL 545
LP ++ +I I TE Q+ L + +V L +L
Sbjct: 243 ---------LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVT---IL 290
Query: 546 LDII-RLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQ 592
+ I L E + M + + + SD N L+
Sbjct: 291 MRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALE 338
>gnl|CDD|30835 COG0489, Mrp, ATPases involved in chromosome partitioning [Cell
division and chromosome partitioning].
Length = 265
Score = 35.8 bits (82), Expect = 0.044
Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 5/137 (3%)
Query: 345 EKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYD 404
E ++ ++ K +I G GVGK+++A ++A A + R+ + D
Sbjct: 37 EALRALRTNLKFAKVLRKGVKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRV---LLLD 93
Query: 405 EADIRGHRRTYI-GSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDP 463
AD+RG + G + L + P++ D I + G +L
Sbjct: 94 -ADLRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKVLSILPLGPVPVIPRGLLGS 152
Query: 464 AQNSSFVDHYLEVEYDL 480
++ L EYD
Sbjct: 153 KAMLQLLEDVLWGEYDY 169
>gnl|CDD|35383 KOG0161, KOG0161, KOG0161, Myosin class II heavy chain
[Cytoskeleton].
Length = 1930
Score = 36.0 bits (83), Expect = 0.045
Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 11/139 (7%)
Query: 163 KKISPEVIGITSQIEGFSKLADVIAANLSIKVAERQKILEAVSVKE-RLEMLLVFMESEI 221
KK EV+ ++E K L ++ E ++ +EA + K LE ++ E+
Sbjct: 1364 KKFEEEVLQRLEELEELKK-------KLQQRLQELEEQIEAANAKNASLEKAKNRLQQEL 1416
Query: 222 SVLQVEKRIRSRVKRQMEKTQREYYLHEQMKAIQKELDNGEEGRD-EISDFEARISKIRL 280
LQ++ +EK Q+ + + + +K+L+ + D + ++++
Sbjct: 1417 EDLQLDLERSRAAVAALEKKQKRFE--KLLAEWKKKLEKLQAELDAAQRELRQLSTELQK 1474
Query: 281 SKEAREKALSELQKLRQMN 299
K A E+ L +L++LR+ N
Sbjct: 1475 LKNALEELLEQLEELRREN 1493
Score = 30.2 bits (68), Expect = 2.3
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
Query: 195 AERQKILEAVSVKERLEMLLVFMESEISVLQVEKRIRSRVKRQMEKTQREYYLHEQMKAI 254
AE++ + EA + ERL +E E+ L+ ++E+ ++ K
Sbjct: 884 AEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELER--------KKRKLE 935
Query: 255 QKELDNGEEGRDEISDFEARISKIRLSKEAREKALSELQK 294
Q+ + E+ + E + K+ L K A E L L++
Sbjct: 936 QEVQELKEQLEEL----ELTLQKLELEKNAAENKLKNLEE 971
Score = 30.2 bits (68), Expect = 2.6
Identities = 29/150 (19%), Positives = 64/150 (42%), Gaps = 13/150 (8%)
Query: 160 KLNKKISPEVIGITSQIEGFSKLADVIAANLSIKVAERQKILEAV----SVKERLEMLLV 215
K +K+ E+ + IE K + + L K +E ++ + + +L+ +
Sbjct: 1041 KAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIK 1100
Query: 216 FMESEISVLQ----VEKRIRSRVKRQMEKTQREYYLHEQMKAIQKELDNGEEGRDEI-SD 270
+E+ I L+ E+ R++ +RQ E E++K +E + E+
Sbjct: 1101 ELEARIKELEEELEAERASRAKAERQRRDLSEEL---EELKEELEEQGGTTAAQLELNKK 1157
Query: 271 FEARISKIRLSKEAREKAL-SELQKLRQMN 299
EA + K+R E +++++LR+ +
Sbjct: 1158 REAEVQKLRRDLEEETLDHEAQIEELRKKH 1187
Score = 28.3 bits (63), Expect = 9.5
Identities = 28/137 (20%), Positives = 61/137 (44%), Gaps = 5/137 (3%)
Query: 157 NYIKLNKKISPEVIGITSQIEGFSKLADVIAANLSIKVAERQKILEAVSVKERLEMLLVF 216
+KL ++ + + ++ E ++ +++ + K +++ E E E
Sbjct: 867 KLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAE 926
Query: 217 MESEISVLQVEKRIRSRVKRQMEKTQREYYLHEQMKAIQKELDNGEEGRDEISDFEARIS 276
+E + L+ E + ++E T ++ L + A + +L N EE EI+ + IS
Sbjct: 927 LERKKRKLEQEVQELKEQLEELELTLQK--LELEKNAAENKLKNLEE---EINSLDENIS 981
Query: 277 KIRLSKEAREKALSELQ 293
K+ K+ E+ + ELQ
Sbjct: 982 KLSKEKKELEERIRELQ 998
>gnl|CDD|37181 KOG1970, KOG1970, KOG1970, Checkpoint RAD17-RFC complex,
RAD17/RAD24 component [Energy production and conversion,
Replication, recombination and repair].
Length = 634
Score = 35.8 bits (82), Expect = 0.047
Identities = 43/198 (21%), Positives = 63/198 (31%), Gaps = 25/198 (12%)
Query: 301 LSAESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMR 360
E SV N W +K K + + A+ +K+ E V
Sbjct: 53 FDDEESVHLNNEKEDEFELWVEKYKPRTLEELAVH--------KKKISEVKQWLKQVAEF 104
Query: 361 VIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGH----RRTYI 416
K IL GP G GK++ + ++K G Q + S E + +
Sbjct: 105 TPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPY 164
Query: 417 GSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLE- 475
S L RA + L + G DLR D L+E L P Q
Sbjct: 165 QSQLAVFESFLLRATKYGSLQMS------GDDLRTDKKLILVEDL-PNQFYRDDSETFRE 217
Query: 476 -----VEYDLSDVMFIMT 488
V ++FI+T
Sbjct: 218 VLRLYVSIGRCPLIFIIT 235
>gnl|CDD|35952 KOG0733, KOG0733, KOG0733, Nuclear AAA ATPase (VCP subfamily)
[Posttranslational modification, protein turnover,
chaperones].
Length = 802
Score = 35.7 bits (82), Expect = 0.047
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 16/83 (19%)
Query: 366 GLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHR--RTYIGSMPGRI 423
G++LC GPPG GKT LA+++A G ++ ++G Y+G +
Sbjct: 547 GVLLC--GPPGCGKTLLAKAVANEAGANFI-----------SVKGPELLNKYVGESERAV 593
Query: 424 IQSLKRAKRSNP-LLLLDEIDKM 445
Q +RA+ S P ++ DEID +
Sbjct: 594 RQVFQRARASAPCVIFFDEIDAL 616
Score = 35.4 bits (81), Expect = 0.065
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 373 GPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKR 432
GPPG GKTSLA +IA G ++ +S + + G G +I + +AK
Sbjct: 230 GPPGCGKTSLANAIAGELGVPFLSISAPEI-----VSG----VSGESEKKIRELFDQAKS 280
Query: 433 SNP-LLLLDEIDKMGS 447
+ P ++ +DEID +
Sbjct: 281 NAPCIVFIDEIDAITP 296
>gnl|CDD|35961 KOG0742, KOG0742, KOG0742, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 630
Score = 35.8 bits (82), Expect = 0.049
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 349 ERIIEYLAVQMRVIK-NKGLI--LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV 402
E+ IE LA+ K ++ + F GPPG GKT A+ +A+ +G Y M+ G V
Sbjct: 364 EKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDV 420
>gnl|CDD|35957 KOG0738, KOG0738, KOG0738, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 491
Score = 35.3 bits (81), Expect = 0.060
Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 27/159 (16%)
Query: 365 KGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRII 424
KG+++ VGPPG GKT LA+++A G + +S + + RG + R++
Sbjct: 246 KGVLM--VGPPGTGKTLLAKAVATECGTTFFNVSSSTL--TSKWRGESEKLV-----RLL 296
Query: 425 QSLKRAKRSNPLLLLDEIDKMGSDLRGDPS---------AALLEVLDPAQNSS------F 469
+ R + + +DEID + S RG S + LL +D Q +
Sbjct: 297 FEMAR-FYAPSTIFIDEIDSLCSQ-RGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVM 354
Query: 470 VDHYLEVEYDLSDVMFIMTANTLNIPLPLMD-RMEIIRI 507
V +D+ + + + IPLP + R +I+I
Sbjct: 355 VLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKI 393
>gnl|CDD|147726 pfam05729, NACHT, NACHT domain. This NTPase domain is found in
apoptosis proteins as well as those involved in MHC
transcription activation. This family is closely related
to pfam00931.
Length = 165
Score = 35.4 bits (82), Expect = 0.068
Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 16/107 (14%)
Query: 369 LCFVGPPGVGKTSLAQSIAK--ATGR-----QYV------RMSLGGVYDEAD-IRGHRRT 414
+ G G GKT+L Q +A A G+ +V +S G AD +
Sbjct: 3 VILQGEAGSGKTTLLQKLALLWAQGKLPQDFDFVFFLPCRELSRSGEASLADLLFSQWPE 62
Query: 415 YIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVL 461
+ L+ +R LL+LD +D++ SDL + L
Sbjct: 63 PAAPVSEVWAVILELPERV--LLILDGLDELASDLGQLDGPLPVLTL 107
>gnl|CDD|35946 KOG0727, KOG0727, KOG0727, 26S proteasome regulatory complex,
ATPase RPT3 [Posttranslational modification, protein
turnover, chaperones].
Length = 408
Score = 35.4 bits (81), Expect = 0.070
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 10/76 (13%)
Query: 373 GPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKR 432
GPPG GKT LA+++A T ++R+ +G + + Y+G P + + AK
Sbjct: 196 GPPGTGKTMLAKAVANHTTAAFIRV-VGSEFVQ--------KYLGEGPRMVRDVFRLAKE 246
Query: 433 SNP-LLLLDEIDKMGS 447
+ P ++ +DEID + +
Sbjct: 247 NAPSIIFIDEIDAIAT 262
>gnl|CDD|35832 KOG0612, KOG0612, KOG0612, Rho-associated, coiled-coil containing
protein kinase [Signal transduction mechanisms].
Length = 1317
Score = 34.6 bits (79), Expect = 0.11
Identities = 52/242 (21%), Positives = 93/242 (38%), Gaps = 16/242 (6%)
Query: 142 VELEALSRSVIAEFSNYIKLNKKISPEVIGITSQIE-GFSKLADVIAANLSIKVAERQKI 200
E R E S I+ + + ++ S +E SKL+ S ER++
Sbjct: 559 SEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQR 618
Query: 201 LEAVSVKERLEMLLVFMESEISVLQVEKRIRSRVKR-------QMEKTQREYYLHEQMKA 253
E + L+ + +E + + E +KR EK E L ++K
Sbjct: 619 TEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKM 678
Query: 254 IQKELD--NGEEGRDEISDFEAR----ISKIRLSKEAREKALSELQKL-RQMNPLSAESS 306
+Q EL+ N E R + D EA+ SK+ K AREKA + L ++ ++ LS +
Sbjct: 679 LQNELEQENAEHHRLRLQDKEAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYK 738
Query: 307 VVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKG 366
+ L+ L D+ L + L++ + + + +M + K
Sbjct: 739 QSQEKLNELRRSK-DQLITEVLKLQSMLEQEISKRLSLQRELKSQEQEVNTKMLEKQLKK 797
Query: 367 LI 368
L+
Sbjct: 798 LL 799
>gnl|CDD|143799 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
nucleotide-binding domain. This family includes the ATP
synthase alpha and beta subunits, the ATP synthase
associated with flagella and the termination factor Rho.
Length = 213
Score = 34.7 bits (81), Expect = 0.11
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLG 400
+ G G GKT L IA+ V + +
Sbjct: 18 IGIFGGSGTGKTVLLGMIARNAKADVVEVYVL 49
>gnl|CDD|37180 KOG1969, KOG1969, KOG1969, DNA replication checkpoint protein
CHL12/CTF18 [Energy production and conversion,
Replication, recombination and repair].
Length = 877
Score = 34.6 bits (79), Expect = 0.11
Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 363 KNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRM 397
K L+LC GPPG+GKT+LA IAK G V +
Sbjct: 325 PKKILLLC--GPPGLGKTTLAHVIAKQAGYSVVEI 357
>gnl|CDD|35960 KOG0741, KOG0741, KOG0741, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 744
Score = 34.6 bits (79), Expect = 0.11
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 353 EYLAVQMRVIKNKGLILCFV-GPPGVGKTSLAQSIAKATGRQYVRM 397
+ L Q++ + L+ + GPPG GKT+LA IA ++ +V++
Sbjct: 524 KLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKI 569
Score = 29.5 bits (66), Expect = 3.8
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 358 QMRVIKNKGLILCFVGPPGVGKTSLAQSIAK 388
Q+ + KG++L GPPG GKT +A+ I K
Sbjct: 250 QLGIKHVKGILL--YGPPGTGKTLIARQIGK 278
>gnl|CDD|32629 COG2766, PrkA, Putative Ser protein kinase [Signal transduction
mechanisms].
Length = 649
Score = 34.5 bits (79), Expect = 0.12
Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 5/126 (3%)
Query: 269 SDFEARISKIRLSKEAREKALSELQKLRQMNPLSAESSVVRNYLDWLLGVPWDKKSKTKK 328
D + + + E E + +P ++ R D + +
Sbjct: 1 MDIFDHVEERYEEAKKEEGTFQEYLAACKEDPTVYANAHERLADAIGDPEMVDTEHDGRL 60
Query: 329 NLDFAIRILD-----QDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLA 383
+ F+ R++D D FG+E+ E+I+ Y + ++ + IL +GP G GK+SLA
Sbjct: 61 SRIFSNRVIDRYPAFNDFFGMEESIEQIVGYFKHAAQGLEERKQILYLLGPVGGGKSSLA 120
Query: 384 QSIAKA 389
+ + +
Sbjct: 121 ERLKRL 126
>gnl|CDD|35947 KOG0728, KOG0728, KOG0728, 26S proteasome regulatory complex,
ATPase RPT6 [Posttranslational modification, protein
turnover, chaperones].
Length = 404
Score = 34.2 bits (78), Expect = 0.13
Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 35/178 (19%)
Query: 365 KGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRII 424
KG++L GPPG GKT LA+++A T ++R+S + + YIG +
Sbjct: 182 KGVLL--YGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK---------YIGEGSRMVR 230
Query: 425 QSLKRAKRSNP-LLLLDEIDKMGSDLRGDPSAA--------LLEVLDPAQNSSFVDHYLE 475
+ A+ P ++ +DEID +GS R + + +LE+L+ Q F
Sbjct: 231 ELFVMAREHAPSIIFMDEIDSIGSS-RVESGSGGDSEVQRTMLELLN--QLDGFEAT--- 284
Query: 476 VEYDLSDVMFIMTANTLNIPLPLMDRM----EIIRIAGYTEEEKLQIAKNHLVKKVLT 529
++ IM N ++I P + R I EE +L I K H K LT
Sbjct: 285 -----KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT 337
>gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional.
Length = 489
Score = 34.2 bits (79), Expect = 0.13
Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 37/173 (21%)
Query: 365 KGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRII 424
+GL+L VG G GK+ A++IA +R+ +G ++ I +G R+
Sbjct: 260 RGLLL--VGIQGTGKSLTAKAIANDWQLPLLRLDVGKLF--GGI-------VGESESRMR 308
Query: 425 QSLKRAKRSNPLLL-LDEIDKM--GSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLS 481
Q ++ A+ +P +L +DEIDK S+ +GD S VL ++F+ E + S
Sbjct: 309 QMIRIAEALSPCILWIDEIDKAFSNSESKGD-SGTTNRVL-----ATFITWLSEKK---S 359
Query: 482 DVMFIMTANTLNIPLPLMDRMEIIRIAGYTE---------EEKLQIAKNHLVK 525
V + TAN +++ LPL EI+R + E EE+ +I K HL K
Sbjct: 360 PVFVVATANNIDL-LPL----EILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407
>gnl|CDD|35948 KOG0729, KOG0729, KOG0729, 26S proteasome regulatory complex,
ATPase RPT1 [Posttranslational modification, protein
turnover, chaperones].
Length = 435
Score = 34.2 bits (78), Expect = 0.15
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 13/81 (16%)
Query: 368 ILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSL 427
+L + GPPG GKT A+++A T ++R+ + + Y+G R+++ L
Sbjct: 214 VLLY-GPPGTGKTLCARAVANRTDACFIRVIGSELVQK---------YVGE-GARMVREL 262
Query: 428 KRAKRSNP--LLLLDEIDKMG 446
R+ ++ DEID +G
Sbjct: 263 FEMARTKKACIIFFDEIDAIG 283
>gnl|CDD|30759 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 34.3 bits (79), Expect = 0.16
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRG---HRRTYIG 417
+G I+ +G G GKT+L ++I + R+ G DI G H R +G
Sbjct: 27 ERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDG----EDITGLPPHERARLG 79
>gnl|CDD|147593 pfam05496, RuvB_N, Holliday junction DNA helicase ruvB N-terminus.
The RuvB protein makes up part of the RuvABC revolvasome
which catalyses the resolution of Holliday junctions
that arise during genetic recombination and DNA repair.
Branch migration is catalysed by the RuvB protein that
is targeted to the Holliday junction by the structure
specific RuvA protein. This family contains the
N-terminal region of the protein.
Length = 234
Score = 34.0 bits (79), Expect = 0.18
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 371 FVGPPGVGKTSLAQSIAKATG 391
GPPG+GKT+LA IA G
Sbjct: 55 LYGPPGLGKTTLANIIANEMG 75
>gnl|CDD|32099 COG1915, COG1915, Uncharacterized conserved protein [Function
unknown].
Length = 415
Score = 33.7 bits (77), Expect = 0.20
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 345 EKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG 401
E+ E +IE +A ++R I++KG + V P V T AQ +A YV L G
Sbjct: 179 ERPVETLIEQIAWEIREIRDKGGKIVVVAGPAVIHTGAAQHLAHLIREGYVDALLAG 235
>gnl|CDD|109812 pfam00769, ERM, Ezrin/radixin/moesin family. This family of
proteins contain a band 4.1 domain (pfam00373), at their
amino terminus. This family represents the rest of these
proteins.
Length = 244
Score = 33.6 bits (77), Expect = 0.22
Identities = 17/89 (19%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 211 EMLLVFMESEISVLQVEKRIRSRVKRQMEKT-QREYYLHEQMKAIQKELDNGEEGR---- 265
E E + L++E++ + + + + ++ L E+ + +++E EE R
Sbjct: 23 RAQKELEEYEETALELEEK-LKQEEEEAQLLEKKADELEEENRRLEEEAAASEEERERLE 81
Query: 266 DEISDFEARISKIRLSKEAREKALSELQK 294
E+ + A ++K+ +E +E +LQ+
Sbjct: 82 AEVDEATAEVAKLEEEREKKEAETRQLQQ 110
>gnl|CDD|35871 KOG0652, KOG0652, KOG0652, 26S proteasome regulatory complex,
ATPase RPT5 [Posttranslational modification, protein
turnover, chaperones].
Length = 424
Score = 33.5 bits (76), Expect = 0.22
Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 28/137 (20%)
Query: 343 GLEKVKERIIEYLAVQMR---------VIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQ 393
GL+K + ++E + + M + KG+++ GPPG GKT +A++ A T
Sbjct: 175 GLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLM--YGPPGTGKTLMARACAAQTNAT 232
Query: 394 YVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNP-LLLLDEIDKMG-----S 447
+++++ + + +IG + + AK P ++ +DE+D +G S
Sbjct: 233 FLKLAGPQLV---------QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDS 283
Query: 448 DLRGDPSA--ALLEVLD 462
+ GD +LE+L+
Sbjct: 284 EKAGDREVQRTMLELLN 300
>gnl|CDD|133282 cd01882, BMS1, Bms1. Bms1 is an essential, evolutionarily
conserved, nucleolar protein. Its depletion interferes
with processing of the 35S pre-rRNA at sites A0, A1, and
A2, and the formation of 40S subunits. Bms1, the
putative endonuclease Rc11, and the essential U3 small
nucleolar RNA form a stable subcomplex that is believed
to control an early step in the formation of the 40S
subumit. The C-terminal domain of Bms1 contains a
GTPase-activating protein (GAP) that functions
intramolecularly. It is believed that Rc11 activates
Bms1 by acting as a guanine-nucleotide exchange factor
(GEF) to promote GDP/GTP exchange, and that activated
(GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Length = 225
Score = 33.0 bits (76), Expect = 0.33
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 18/81 (22%)
Query: 367 LILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRG--------HRRTYIGS 418
L++ VGPPGVGKT+L +S+ K Y + ++ DI+G RR
Sbjct: 40 LVVAVVGPPGVGKTTLIKSLVK----NYTKQNIS------DIKGPITVVTGKKRRLTFIE 89
Query: 419 MPGRIIQSLKRAKRSNPLLLL 439
P I + AK ++ +LLL
Sbjct: 90 CPNDINAMIDIAKVADLVLLL 110
>gnl|CDD|35963 KOG0744, KOG0744, KOG0744, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 423
Score = 33.0 bits (75), Expect = 0.33
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 347 VKERIIEYLAVQMR---------VIKNKGLILCFVGPPGVGKTSLAQSIAK 388
+KER++ Y A + +I LIL GPPG GKTSL +++A+
Sbjct: 150 LKERLLSYAASALLFSEKKVNTNLITWNRLIL-LHGPPGTGKTSLCKALAQ 199
>gnl|CDD|110446 pfam01443, Viral_helicase1, Viral (Superfamily 1) RNA helicase.
Helicase activity for this family has been demonstrated
and NTPase activity. This helicase has multiple roles at
different stages of viral RNA replication, as dissected
by mutational analysis.
Length = 226
Score = 33.1 bits (76), Expect = 0.35
Identities = 22/120 (18%), Positives = 44/120 (36%), Gaps = 21/120 (17%)
Query: 373 GPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQS--LKRA 430
G PG GK++L + + + A++R + + ++ R + + +
Sbjct: 5 GVPGCGKSTLIRKLLRTDLTVIRPT--------AELRTEGKPDLPNLNVRTVDTFLMALL 56
Query: 431 KRSNPLLLLDEIDKMGS----DLRGDPSAALLEVL-DPAQ------NSSFVDHYLEVEYD 479
K + +L+LDE + L A L+ + DP Q SF+ +
Sbjct: 57 KPTGKILILDEYTLLPPGYILLLAAISGAKLVILFGDPLQIPYHSRAPSFLIAHFPSSLS 116
>gnl|CDD|31805 COG1618, COG1618, Predicted nucleotide kinase [Nucleotide transport
and metabolism].
Length = 179
Score = 32.9 bits (75), Expect = 0.36
Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 32/103 (31%)
Query: 373 GPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRT------------------ 414
G PGVGKT+L IA+ + +GG G +R
Sbjct: 12 GRPGVGKTTLVLKIAEKLREK--GYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARV 69
Query: 415 ------------YIGSMPGRIIQSLKRAKRSNPLLLLDEIDKM 445
+ + I +L+RA ++++DEI M
Sbjct: 70 GFSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPM 112
>gnl|CDD|31417 COG1224, TIP49, DNA helicase TIP49, TBP-interacting protein
[Transcription].
Length = 450
Score = 32.5 bits (74), Expect = 0.42
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 353 EYLAVQMRVIKNK---GLILCFVGPPGVGKTSLAQSIAKATGRQ--YVRMSLGGVY 403
E V +++IK G + VGPPG GKT+LA IA+ G +V +S +Y
Sbjct: 49 EAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIY 104
>gnl|CDD|30768 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 32.7 bits (74), Expect = 0.42
Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 7/120 (5%)
Query: 186 IAANLSIKVAERQKILEAVSVKERLEMLLVFM-------ESEISVLQVEKRIRSRVKRQM 238
A L K ER++IL+ + E+ E L + +++I L+ + +
Sbjct: 145 FDAFLKSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDL 204
Query: 239 EKTQREYYLHEQMKAIQKELDNGEEGRDEISDFEARISKIRLSKEAREKALSELQKLRQM 298
+ E + +E EE EI E R++++ KE E+ + L ++ +
Sbjct: 205 LEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESL 264
>gnl|CDD|38557 KOG3347, KOG3347, KOG3347, Predicted nucleotide kinase/nuclear
protein involved oxidative stress response [Nucleotide
transport and metabolism].
Length = 176
Score = 32.5 bits (74), Expect = 0.44
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 373 GPPGVGKTSLAQSIAKATGRQYVRMS 398
G PG GK++LA+ +A+ TG +Y+ +S
Sbjct: 14 GTPGTGKSTLAERLAEKTGLEYIEIS 39
>gnl|CDD|72990 cd03231, ABC_CcmA_heme_exporter, CcmA, the ATP-binding component of
the bacterial CcmAB transporter. The CCM family is
involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperone
that binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE..
Length = 201
Score = 32.6 bits (74), Expect = 0.45
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 364 NKGLILCFVGPPGVGKTSLAQSIA----KATGRQYVRMSLGGVYDEADIRGHRRTYIGSM 419
G L GP G GKT+L + +A GR V ++ G + + D Y+G
Sbjct: 24 AAGEALQVTGPNGSGKTTLLRILAGLSPPLAGR--VLLNGGPLDFQRDSIARGLLYLGHA 81
Query: 420 PG 421
PG
Sbjct: 82 PG 83
>gnl|CDD|30834 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 32.5 bits (74), Expect = 0.46
Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 24/157 (15%)
Query: 235 KRQMEKTQREYYLHEQMKAIQKELDNGEEGRDEISDFEARISKIRLSKEAREKALSELQK 294
++ Q +Q K + KE + I +A SK + +K +R K L +L+
Sbjct: 241 QKAERLRQEAAAYEKQQKELAKEQEW-------IRRGKAAASKAKKAK-SRIKRLEKLEA 292
Query: 295 LRQMNPLSAESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEY 354
E + P K K L+F ++ R++
Sbjct: 293 RLAEERPVEEGKPLA------FRFPPPGKRLGKLVLEF-------ENVSKGYDGGRLL-L 338
Query: 355 LAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATG 391
+ R+ ++G + VGP G GK++L + +A G
Sbjct: 339 KDLSFRI--DRGDRIAIVGPNGAGKSTLLKLLAGELG 373
>gnl|CDD|144592 pfam01057, Parvo_NS1, Parvovirus non-structural protein NS1. This
family also contains the NS2 protein. Parvoviruses
encode two non-structural proteins, NS1 and NS2. The
mRNA for NS2 contains the coding sequence for the first
87 amino acids of NS1, then by an alternative splicing
mechanism mRNA from a different reading frame, encoding
the last 78 amino acids, makes up the full length of the
NS2 mRNA. NS1, is the major non-structural protein. It
is essential for DNA replication. It is an 83-kDa
nuclear phosphoprotein. It has DNA helicase and ATPase
activity.
Length = 271
Score = 32.7 bits (75), Expect = 0.48
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 369 LCFVGPPGVGKTSLAQSIAKATGR 392
+ F GP GKT+LAQ+IA A
Sbjct: 116 VWFYGPASTGKTNLAQAIAHAVPL 139
>gnl|CDD|144508 pfam00931, NB-ARC, NB-ARC domain.
Length = 285
Score = 32.3 bits (74), Expect = 0.55
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 345 EKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAK--ATGRQY 394
E + E +IE L + + +N G ++ VG GVGKT+LA+ I + G +
Sbjct: 2 EDMIEALIEKL---LEMSENLG-VVGIVGMGGVGKTTLAKQIYNDDSVGGHF 49
>gnl|CDD|35962 KOG0743, KOG0743, KOG0743, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 457
Score = 32.2 bits (73), Expect = 0.60
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 33/111 (29%)
Query: 345 EKVKERIIEYLAVQMRVIKNK------------GLILCFVGPPGVGKTSLAQSIAKATGR 392
+KERII+ L IK K G +L GPPG GK+S ++A
Sbjct: 207 PDLKERIIDDLD---DFIKGKDFYKRVGKAWKRGYLL--YGPPGTGKSSFIAAMANYLNY 261
Query: 393 QYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEID 443
+ L V ++D+R L A + +LL+++ID
Sbjct: 262 DIYDLELTEVKLDSDLR----------------HLLLATPNKSILLIEDID 296
>gnl|CDD|177027 CHL00095, clpC, Clp protease ATP binding subunit.
Length = 821
Score = 32.3 bits (74), Expect = 0.61
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 30/130 (23%)
Query: 323 KSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTS- 381
K NLD I G EK ER+I+ L R KN +++ G PGVGKT+
Sbjct: 171 KEAIDGNLDPVI--------GREKEIERVIQILG---RRTKNNPILI---GEPGVGKTAI 216
Query: 382 ---LAQSIAKAT------GRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKR 432
LAQ I + + + +G + RG + RI ++
Sbjct: 217 AEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERL----KRIFDEIQENN- 271
Query: 433 SNPLLLLDEI 442
N +L++DE+
Sbjct: 272 -NIILVIDEV 280
Score = 29.6 bits (67), Expect = 3.8
Identities = 41/134 (30%), Positives = 59/134 (44%), Gaps = 31/134 (23%)
Query: 371 FVGPPGVGKTSLAQSIAK---ATGRQYVR--MSLGGVYDEADIRGHRRT---YIGSMPGR 422
F GP GVGKT L +++A + +R MS Y E + T IGS PG
Sbjct: 544 FSGPTGVGKTELTKALASYFFGSEDAMIRLDMS---EYME------KHTVSKLIGSPPGY 594
Query: 423 IIQS----LKRAKRSNP--LLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEV 476
+ + L A R P ++L DEI+K D+ LL++LD + D
Sbjct: 595 VGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFN----LLLQILD---DGRLTDSKGRT 647
Query: 477 EYDLSDVMFIMTAN 490
D + + IMT+N
Sbjct: 648 -IDFKNTLIIMTSN 660
>gnl|CDD|36195 KOG0977, KOG0977, KOG0977, Nuclear envelope protein lamin,
intermediate filament superfamily [Cell cycle control,
cell division, chromosome partitioning, Nuclear
structure].
Length = 546
Score = 31.8 bits (72), Expect = 0.72
Identities = 44/245 (17%), Positives = 95/245 (38%), Gaps = 18/245 (7%)
Query: 123 REDFLEAITQVLPDPTEDPVELEALSRSVIAEFSNYIKLNKKISPEVIGITSQIEGFSKL 182
R+ +A + + L LS + AE + + K + E+ + ++ +
Sbjct: 126 RKKLEKAEKERRGAREKLDDYLSRLS-ELEAEINTLKRRIKALEDELKRLKAENSRLREE 184
Query: 183 ADVIAANLSIKVAERQKILEAV-SVKERLEMLLVFMESEISVLQVEKRIRSRVKRQMEKT 241
L + R + V ++ E L L + EI + R + +R
Sbjct: 185 LARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEI------EEERRKARRDTTAD 238
Query: 242 QREYYLHEQMKAIQ----KELDNGEEGRDEISD-FEARISKIRLSKE----AREKALSEL 292
REY+ +E AI+ + + R +I ++ +I +IR S E + A EL
Sbjct: 239 NREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREEL 298
Query: 293 QKLR-QMNPLSAESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKERI 351
+++R +++ L A+ S + + L D + + ++ + L+ + K++E
Sbjct: 299 RRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREEC 358
Query: 352 IEYLA 356
+
Sbjct: 359 QQLSV 363
Score = 29.9 bits (67), Expect = 2.7
Identities = 40/214 (18%), Positives = 80/214 (37%), Gaps = 31/214 (14%)
Query: 116 RIVEYIEREDFLEAITQVLPDPTEDPVELEALSRSVIAEFSNY-IKLNKKISPEVIGITS 174
R+ YIE+ FLEA + L ++ L V E S K +++ +
Sbjct: 50 RLAVYIEKVRFLEAQNRKL------EHDINLLRGVVGRETSGIKAKYEAELATARKLLDE 103
Query: 175 QIEGFSKLADVIA------ANLSIKVAERQKILEAVSVKERLEM-LLVFMESEISVLQVE 227
+KL I L K+ + +K K + L +E+EI+ L+
Sbjct: 104 TARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRR 163
Query: 228 KRI----RSRVKRQMEKTQREYYLHEQMKAIQKELDNGEEGRDEISDFEARIS----KIR 279
+ R+K + + L E++ +K+LD+ R D + R+ ++
Sbjct: 164 IKALEDELKRLKAENSR------LREELARARKQLDDETLLR---VDLQNRVQTLLEELA 214
Query: 280 LSKEAREKALSELQKLRQMNPLSAESSVVRNYLD 313
K ++ + E ++ + + + +N L
Sbjct: 215 FLKRIHKQEIEEERRKARRDTTADNREYFKNELA 248
>gnl|CDD|35954 KOG0735, KOG0735, KOG0735, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 952
Score = 31.9 bits (72), Expect = 0.79
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 25/123 (20%)
Query: 343 GLEKVKERIIEYLA---------VQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQ 393
GL + K+ + E + + G++L GPPG GKT LA +IA + +
Sbjct: 671 GLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILL--YGPPGCGKTLLASAIASNSNLR 728
Query: 394 YVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNP-LLLLDEID----KMGSD 448
++ + + + YIG+ + +RA+ + P +L DE D K G D
Sbjct: 729 FISVKGPELLSK---------YIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD 779
Query: 449 LRG 451
G
Sbjct: 780 STG 782
>gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They
export degradative enzymes by using a type I protein
secretion system and lack an N-terminal signal peptide,
but contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family
of ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA..
Length = 173
Score = 31.7 bits (72), Expect = 0.85
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 30/119 (25%)
Query: 366 GLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV----YDEADIRGHRRTYIGSMP- 420
G L +GP G GK++LA+ I R+ L G +D ++ H +G +P
Sbjct: 28 GESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDH----VGYLPQ 83
Query: 421 ------GRIIQS-----------LKRAKRSNP-LLLLDEIDKMGSDLRGDPSAALLEVL 461
G I ++ L RA NP +L+LDE + S L + AL + +
Sbjct: 84 DDELFSGSIAENILSGGQRQRLGLARALYGNPRILVLDEPN---SHLDVEGERALNQAI 139
>gnl|CDD|36919 KOG1707, KOG1707, KOG1707, Predicted Ras related/Rac-GTP binding
protein [Defense mechanisms].
Length = 625
Score = 31.5 bits (71), Expect = 0.88
Identities = 21/89 (23%), Positives = 27/89 (30%), Gaps = 21/89 (23%)
Query: 369 LCFV-GPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSL 427
CFV GP GK++L QS R G+ R +
Sbjct: 427 QCFVVGPKNCGKSALLQSFLG--------------------RSMSDNNTGTTKPRYAVNS 466
Query: 428 KRAKRSNPLLLLDEIDKMGSDLRGDPSAA 456
K L+L EI + D AA
Sbjct: 467 VEVKGQQKYLILREIGEDDQDFLTSKEAA 495
>gnl|CDD|30188 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the
shikimate pathway, a seven-step biosynthetic pathway
which converts erythrose-4-phosphate to chorismic acid,
found in bacteria, fungi and plants. Chorismic acid is a
important intermediate in the synthesis of aromatic
compounds, such as aromatic amino acids, p-aminobenzoic
acid, folate and ubiquinone. Shikimate kinase catalyses
the phosphorylation of the 3-hydroxyl group of shikimic
acid using ATP..
Length = 154
Score = 31.7 bits (72), Expect = 0.89
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 371 FVGPPGVGKTSLAQSIAKATGRQYV 395
+G G GKT++ + +AKA G +V
Sbjct: 4 LIGMMGAGKTTVGRLLAKALGLPFV 28
>gnl|CDD|36703 KOG1490, KOG1490, KOG1490, GTP-binding protein CRFG/NOG1 (ODN
superfamily) [General function prediction only].
Length = 620
Score = 31.5 bits (71), Expect = 0.98
Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 15/164 (9%)
Query: 228 KRIRSRVKRQMEKTQREYYLHEQMKAIQKELDNGEEGRDEISDFEARISKIRLSKEAREK 287
RIR R+++ TQ L E++ I +E ++I F A + I ++ +
Sbjct: 41 SRIRQFYARKVKFTQTT--LTEKLDDILQEFPK----LNDIHPFYADLLNILYDRDHYKI 94
Query: 288 ALSELQKLRQMNPLSAESSVVRNYLDWLLGVPWDKKSKTKKN--LDFAIRILDQDHFGLE 345
AL ++ + + +V R+Y+ L + K K L I+ + LE
Sbjct: 95 ALGQVSTAKHL-----VENVARDYVRLLKYGDSLYRCKQLKRAALGRMATIIKRQKSSLE 149
Query: 346 KVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKA 389
+ E++ ++L+ ++ I L G P VGK+S + +A
Sbjct: 150 YL-EQVRQHLS-RLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRA 191
>gnl|CDD|39860 KOG4661, KOG4661, KOG4661, Hsp27-ERE-TATA-binding protein/Scaffold
attachment factor (SAF-B) [Transcription].
Length = 940
Score = 31.3 bits (70), Expect = 0.99
Identities = 25/114 (21%), Positives = 46/114 (40%)
Query: 196 ERQKILEAVSVKERLEMLLVFMESEISVLQVEKRIRSRVKRQMEKTQREYYLHEQMKAIQ 255
ERQ+I E ++R + + E E + + R R + + E+ +RE E+MK +
Sbjct: 625 ERQRIREEREREQRRKAAVEREELERLKAERLRLERQRQRLERERMERERLERERMKVEE 684
Query: 256 KELDNGEEGRDEISDFEARISKIRLSKEAREKALSELQKLRQMNPLSAESSVVR 309
+ D E E + + +R +E R + R+ + ES
Sbjct: 685 ERRDEQERIHREREELRRQQETLRYEQERRPRFRRPYDLDRRDDAYWPESKRKA 738
Score = 30.9 bits (69), Expect = 1.4
Identities = 15/77 (19%), Positives = 32/77 (41%)
Query: 222 SVLQVEKRIRSRVKRQMEKTQREYYLHEQMKAIQKELDNGEEGRDEISDFEARISKIRLS 281
+KR R +R+ E+ QR E+ + + ++ E R + + RL
Sbjct: 607 RERSFDKRKEERRRREAEERQRIREEREREQRRKAAVEREELERLKAERLRLERQRQRLE 666
Query: 282 KEAREKALSELQKLRQM 298
+E E+ E ++++
Sbjct: 667 RERMERERLERERMKVE 683
>gnl|CDD|35883 KOG0664, KOG0664, KOG0664, Nemo-like MAPK-related serine/threonine
protein kinase [Signal transduction mechanisms].
Length = 449
Score = 31.2 bits (70), Expect = 1.0
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 398 SLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAAL 457
+ G V+ D R +R + MP + Q+L KR + EI KM S R D +L
Sbjct: 65 AFGVVWSVTDPRSGKRVALKKMP-NVFQNLASCKR-----VFREI-KMLSSFRHDNVLSL 117
Query: 458 LEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTA 489
L++L PA S F + Y+ E SD+ I+ +
Sbjct: 118 LDILQPANPSFFQELYVLTELMQSDLHKIIVS 149
>gnl|CDD|37179 KOG1968, KOG1968, KOG1968, Replication factor C, subunit RFC1
(large subunit) [Replication, recombination and repair].
Length = 871
Score = 31.6 bits (71), Expect = 1.0
Identities = 47/271 (17%), Positives = 91/271 (33%), Gaps = 26/271 (9%)
Query: 199 KILEAVSVKERLEMLLVFMESEISVLQVEKRIRSRVKRQMEKTQREYYLHEQMKAIQKEL 258
+ S + L+ F S+ L +K + S + + + E ++ + +E
Sbjct: 186 DDIGTGSAEPSLK---EFGASKTESLS-DKTVESCLGDEAIAKKLEKIKELEIPVLLEER 241
Query: 259 DNGEEGRDEISDFEARISKIRLSKEAREKALS---ELQKLRQMNPLSAESSVVRNYLDWL 315
+ E ++ K R E E + S E R+ +S+ V + +
Sbjct: 242 KELFAPLLALQKDEPKVKKARRKSEEGETSSSKKAEKPTARK-----RKSNKVIQFSEPR 296
Query: 316 LGVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKN----------K 365
K S+ + + G ++ ++LA K+ K
Sbjct: 297 KAYSPAKSSEGAGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSK 356
Query: 366 GLILCFVGPPGVGKTSLAQSIAKATGRQYVR----MSLGGVYDEADIRGHRRTYIGSMPG 421
L GPPG+GKT+ A AK G + V + ++
Sbjct: 357 KKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSK 416
Query: 422 RIIQSLKRAKRSNPLLLLDEIDKMGSDLRGD 452
+ + + + L+L+DE+D M + RG
Sbjct: 417 KKKGNRQSLNSDHFLILMDEVDGMFGEDRGG 447
>gnl|CDD|144817 pfam01365, RYDR_ITPR, RIH domain. The RIH (RyR and IP3R Homology)
domain is an extracellular domain from two types of
calcium channels. This region is found in the ryanodine
receptor and the inositol-1,4,5- trisphosphate receptor.
This domain may form a binding site for IP3.
Length = 203
Score = 31.1 bits (71), Expect = 1.1
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 205 SVKERLEMLL-VFMESEISVLQVEKRIRSRVKRQMEKTQREYYLHEQ-MKAIQKELD--N 260
V E LE L+ + E L K+ + RQ ++ RE +H+ ++ +Q D
Sbjct: 1 EVLELLEDLIKFCAQPEEEGLHELKQNNLKPLRQRQRLLREEGVHKVVLELLQNPYDEKA 60
Query: 261 GEEGRDEISD 270
G + +E+ D
Sbjct: 61 GGDFAEELGD 70
>gnl|CDD|146543 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 31.1 bits (71), Expect = 1.2
Identities = 12/73 (16%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 228 KRIRSRVKRQMEKTQREYYLHEQMKAIQKELDNGEEGRDEISDFEARISKIRLSKEAREK 287
K ++K+++E+ ++ + +Q +++ + GR+E + + +++ ++ +K
Sbjct: 68 KTRLEKLKKELEELKQR------IAELQAQIEKLKVGREETEERTELLEELKQLEKELKK 121
Query: 288 ALSELQKLRQMNP 300
+EL+K + +P
Sbjct: 122 LKAELEKYEKNDP 134
>gnl|CDD|30909 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 31.0 bits (70), Expect = 1.3
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 369 LCFVGPPGVGKTSLAQSIAKATG 391
+ +GPPG GK++LA+ +AK G
Sbjct: 3 ILILGPPGAGKSTLAKKLAKKLG 25
>gnl|CDD|30189 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible
phosphoryl transfer from adenosine triphosphates (ATP)
to adenosine monophosphates (AMP) and to yield adenosine
diphosphates (ADP). This enzyme is required for the
biosynthesis of ADP and is essential for homeostasis of
adenosine phosphates..
Length = 194
Score = 31.0 bits (70), Expect = 1.3
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 368 ILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEA 406
+ +GPPG GK + A+ +AK G +S G + E
Sbjct: 1 RILLLGPPGSGKGTQAERLAKKYG--LPHISTGDLLREE 37
>gnl|CDD|35958 KOG0739, KOG0739, KOG0739, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 439
Score = 31.1 bits (70), Expect = 1.3
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 368 ILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSL 427
IL + GPPG GK+ LA+++A + +S + + ++G +
Sbjct: 169 ILLY-GPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK---------WMGESEKLVKNLF 218
Query: 428 KRAKRSNP-LLLLDEIDKMGSDLRGDPSAA 456
+ A+ + P ++ +DEID + + S A
Sbjct: 219 EMARENKPSIIFIDEIDSLCGSRSENESEA 248
>gnl|CDD|146043 pfam03215, Rad17, Rad17 cell cycle checkpoint protein.
Length = 490
Score = 31.2 bits (70), Expect = 1.3
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 13/64 (20%)
Query: 345 EKVKERIIEYLAVQMRVIK-------------NKGLILCFVGPPGVGKTSLAQSIAKATG 391
EK K R + LA+ + I NK LIL GP G GK++ + ++K G
Sbjct: 11 EKYKPRRRDELAIHKKKIAEVDHWLKAVFLESNKQLILLLTGPSGCGKSTTVKVLSKELG 70
Query: 392 RQYV 395
+ +
Sbjct: 71 IEII 74
>gnl|CDD|57927 cd01856, YlqF, YlqF. Proteins of the YlqF family contain all
sequence motifs typical of the vast class of
P-loop-containing GTPases, but show a circular
permutation, with a G4-G1-G3 pattern of motifs as
opposed to the regular G1-G3-G4 pattern seen in most
GTPases. The YlqF subfamily is represented in a
phylogenetically diverse array of bacteria (including
gram-positive bacteria, proteobacteria, Synechocystis,
Borrelia, and Thermotoga) and in all eukaryotes..
Length = 171
Score = 31.0 bits (70), Expect = 1.4
Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 23/97 (23%)
Query: 344 LEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVY 403
L+ K+ + + ++ + + +G+ VG P VGK++L
Sbjct: 93 LKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINR------------------ 134
Query: 404 DEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLD 440
+RG + +G+ PG + + ++ K S + LLD
Sbjct: 135 ----LRGKKVAKVGNKPG-VTKGIQWIKISPGIYLLD 166
>gnl|CDD|35964 KOG0745, KOG0745, KOG0745, Putative ATP-dependent Clp-type protease
(AAA+ ATPase superfamily) [Posttranslational
modification, protein turnover, chaperones].
Length = 564
Score = 30.7 bits (69), Expect = 1.4
Identities = 35/161 (21%), Positives = 69/161 (42%), Gaps = 44/161 (27%)
Query: 372 VGPPGVGKTSLAQSIAKATGRQYV-----RMSLGGVYDEADIRGHRRTYIGSMPGRIIQS 426
+GP G GKT LAQ++A+ + ++ G Y+G +IQ
Sbjct: 232 LGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAG-------------YVGEDVESVIQK 278
Query: 427 L--------KRAKRSNPLLLLDEIDKMGS---------DLRGDP-SAALLEVLD------ 462
L ++A++ ++ LDE+DK+ D+ G+ ALL++L+
Sbjct: 279 LLQEAEYNVEKAQQG--IVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNV 336
Query: 463 PAQNSSFVDHYLEVEYDLSDVMFIMTANTLNIPLPLMDRME 503
P + S V+ D ++++FI + + + + R++
Sbjct: 337 PEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLD 377
>gnl|CDD|36207 KOG0989, KOG0989, KOG0989, Replication factor C, subunit RFC4
[Replication, recombination and repair].
Length = 346
Score = 30.7 bits (69), Expect = 1.6
Identities = 28/130 (21%), Positives = 47/130 (36%), Gaps = 38/130 (29%)
Query: 361 VIKNKGLILCFVGPPGVGKTSLAQSIAKA-------------------TGRQYVRMSLGG 401
+++ F GPPG GKTS A + A+A G VR
Sbjct: 52 LLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVR---EK 108
Query: 402 VYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVL 461
+ + A + + K +++LDE D M SD + AAL +
Sbjct: 109 IKNFAKLT-------VLLKRSDGYPCPPFK----IIILDECDSMTSDAQ----AALRRTM 153
Query: 462 D-PAQNSSFV 470
+ ++ + F+
Sbjct: 154 EDFSRTTRFI 163
>gnl|CDD|37623 KOG2412, KOG2412, KOG2412, Nuclear-export-signal (NES)-containing
protein/polyadenylated-RNA export factor [RNA processing
and modification].
Length = 591
Score = 30.8 bits (69), Expect = 1.7
Identities = 31/184 (16%), Positives = 64/184 (34%), Gaps = 32/184 (17%)
Query: 161 LNKKISPEVIGITSQIEGFSKLADVIAANLSIKVAERQKILEAV---SVKERLEMLLVFM 217
+ + E+ I KL++ + E+ ++L+++ + E
Sbjct: 152 PLPEANQEIETNAENIRLVEKLSETRKEVKRRLLEEQNQVLQSLDTELQAIQREKQRKEQ 211
Query: 218 ESEISVLQVEKRIRSR--------VKRQMEKTQREYYLHEQMKAIQKELDNGEEGRDEIS 269
E EKR + RQ E + E E+++A +++ + + +E +
Sbjct: 212 IRERKERSEEKREEAERKRRAHQEELRQKEDEEAELQEQEKIRAEEEKQEEERKEAEEQA 271
Query: 270 DFEARISKIRLSKEAREKALSE-----LQKLRQM----------------NPLSAESSVV 308
+ E + K K A +KA+ E QM NP+ + +
Sbjct: 272 EKEVQDPKAHEEKLAEQKAVIEKVTTSSASDSQMFWNSQDAIAQSKLDLVNPILKKDEEL 331
Query: 309 RNYL 312
+NY
Sbjct: 332 KNYN 335
>gnl|CDD|31047 COG0703, AroK, Shikimate kinase [Amino acid transport and
metabolism].
Length = 172
Score = 30.6 bits (69), Expect = 1.7
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 371 FVGPPGVGKTSLAQSIAKATGRQYV 395
+G G GK+++ +++AKA ++
Sbjct: 7 LIGFMGAGKSTIGRALAKALNLPFI 31
>gnl|CDD|33633 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 30.7 bits (69), Expect = 1.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 364 NKGLILCFVGPPGVGKTSLAQSIA 387
KG + +GP G GKT+L + IA
Sbjct: 29 KKGEFVTLLGPSGCGKTTLLRMIA 52
>gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI.
Magnesium-chelatase is a three-component enzyme that
catalyses the insertion of Mg2+ into protoporphyrin IX.
This is the first unique step in the synthesis of
(bacterio)chlorophyll. Due to this, it is thought that
Mg-chelatase has an important role in channelling inter-
mediates into the (bacterio)chlorophyll branch in
response to conditions suitable for photosynthetic
growth. ChlI and BchD have molecular weight between
38-42 kDa.
Length = 207
Score = 30.6 bits (70), Expect = 1.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 369 LCFVGPPGVGKTSLAQ 384
L +GPPG GKT LA+
Sbjct: 25 LLMIGPPGSGKTMLAK 40
>gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the
LIV-I bacterial ABC-type two-component transport system
that imports neutral, branched-chain amino acids. The
E. coli branched-chain amino acid transporter comprises
a heterodimer of ABC transporters (LivF and LivG), a
heterodimer of six-helix TM domains (LivM and LivH), and
one of two alternative soluble periplasmic substrate
binding proteins (LivK or LivJ). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules..
Length = 222
Score = 30.4 bits (69), Expect = 1.9
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIG 417
+G I+ +G G GKT+L ++I + + G D + H R G
Sbjct: 24 PEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGR-DITGLPPHERARAG 76
>gnl|CDD|72986 cd03227, ABC_Class2, ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterised by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins..
Length = 162
Score = 30.3 bits (68), Expect = 2.2
Identities = 31/126 (24%), Positives = 46/126 (36%), Gaps = 14/126 (11%)
Query: 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGV--------YDEADIRGHRRTY 415
+G + GP G GK+++ +I A G A++ R
Sbjct: 19 GEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQL 78
Query: 416 IGSMPGRIIQSLKRAKRSN---PLLLLDEIDKMGSDLRGDPSAA--LLEVLDPAQNSSFV 470
G +L A S PL +LDEID+ G D R + A +LE L +
Sbjct: 79 SGGEKELSALALILALASLKPRPLYILDEIDR-GLDPRDGQALAEAILEHLVKGAQVIVI 137
Query: 471 DHYLEV 476
H E+
Sbjct: 138 THLPEL 143
>gnl|CDD|36122 KOG0904, KOG0904, KOG0904, Phosphatidylinositol 3-kinase catalytic
subunit (p110) [Signal transduction mechanisms].
Length = 1076
Score = 30.3 bits (68), Expect = 2.2
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 236 RQMEKTQREYYLHEQMKA-IQKELDNGEEGRD-EISDFEARISKIRLSKEAREKALSELQ 293
Q + E L+ Q+ A I LD + +D E++DF ++ + ALS
Sbjct: 120 VQRHGDREEKLLNSQISALIGYGLDEFDSVKDPELNDFRRKMVQFCKEAVLSRDALSWTS 179
Query: 294 KLRQMNPLSAESS 306
+L M+PL E S
Sbjct: 180 RLYYMHPLYLEPS 192
>gnl|CDD|30833 COG0486, ThdF, Predicted GTPase [General function prediction only].
Length = 454
Score = 30.2 bits (68), Expect = 2.3
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 329 NLDFA-----IRILDQDHFGLEKVKERIIEYLA-VQMRVIKNKGLILCFVGPPGVGKTSL 382
N+DF +L++ LE++ + E LA + I +GL + +G P VGK+SL
Sbjct: 174 NIDFPEEDIEELVLEKIREKLEELIAELDELLATAKQGKILREGLKVVIIGRPNVGKSSL 233
>gnl|CDD|34791 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 30.1 bits (67), Expect = 2.4
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 367 LILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQS 426
I+ VGPPG GK++L +S+ + +Q + G + + RR P + Q
Sbjct: 70 FIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSG--KTRRITFLECPSDLHQM 127
Query: 427 LKRAKRSNPLLLL 439
+ AK ++ +LLL
Sbjct: 128 IDVAKIADLVLLL 140
>gnl|CDD|30543 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 30.1 bits (68), Expect = 2.5
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 365 KGLILCFVGPPGVGKTSLAQSIAKATGRQY 394
KGL++ GP GVGK++L +++ + ++
Sbjct: 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRF 32
>gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated
protein/mitoxantrone resistance protein, ABC superfamily
[Secondary metabolites biosynthesis, transport and
catabolism].
Length = 1381
Score = 30.2 bits (68), Expect = 2.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 365 KGLILCFVGPPGVGKTSLAQSI 386
KG ++ VGP G GK+SL +I
Sbjct: 546 KGQLVAVVGPVGSGKSSLLSAI 567
>gnl|CDD|133292 cd01892, Miro2, Miro2 subfamily. Miro (mitochondrial Rho) proteins
have tandem GTP-binding domains separated by a linker
region containing putative calcium-binding EF hand
motifs. Genes encoding Miro-like proteins were found in
several eukaryotic organisms. This CD represents the
putative GTPase domain in the C terminus of Miro
proteins. These atypical Rho GTPases have roles in
mitochondrial homeostasis and apoptosis. Most Rho
proteins contain a lipid modification site at the
C-terminus; however, Miro is one of few Rho subfamilies
that lack this feature.
Length = 169
Score = 30.3 bits (69), Expect = 2.6
Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 367 LILCFV-GPPGVGKTSLAQS 385
+ LCFV G G GK++L ++
Sbjct: 4 VFLCFVLGAKGSGKSALLRA 23
>gnl|CDD|31281 COG1084, COG1084, Predicted GTPase [General function prediction
only].
Length = 346
Score = 29.8 bits (67), Expect = 2.9
Identities = 37/215 (17%), Positives = 78/215 (36%), Gaps = 30/215 (13%)
Query: 178 GFSKLADVIAANLSIKVAER--QKILEAVSVKERLEMLLVFMESEISVLQVEKRIRSRVK 235
F K+ V A+ I A R ++ V + +++ V +R R+
Sbjct: 4 PFKKIPTVPTADELIDKAFRRAERAESTVRPDKGPKIVKAREFEIRRVKTASNIVRDRLD 63
Query: 236 RQMEKTQREYYLHEQMKAIQKELDNGEEGRDEISDFEARISKIRLSKEAREKALSE-LQK 294
+ +E+ LH +EL + D + +S + + + EK E ++
Sbjct: 64 KIVERFPSLDDLHP----FYRELIDVLVDID---HLKISLSAVSWASKIIEKLAREYIRL 116
Query: 295 LRQMNPLSAESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEY 354
L+ + + R + + I+ +D D L K ++ + +
Sbjct: 117 LKAAKDPKEANQLRRQAFGRVASI---------------IKKIDDDLEFLRKARDHLKKL 161
Query: 355 LAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKA 389
A+ + +++ G P VGK+SL + + A
Sbjct: 162 PAIDPDL---PTIVVA--GYPNVGKSSLVRKLTTA 191
>gnl|CDD|30672 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase
[Translation, ribosomal structure and biogenesis].
Length = 308
Score = 29.8 bits (67), Expect = 2.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 368 ILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADI 408
++ GP GKT+LA ++AK G + + + VY DI
Sbjct: 5 LIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDI 45
>gnl|CDD|32040 COG1855, COG1855, ATPase (PilT family) [General function prediction
only].
Length = 604
Score = 29.9 bits (67), Expect = 3.1
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 12/53 (22%)
Query: 337 LDQDHFGL-EKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAK 388
L + +GL +K+KER+ E + +G+++ G PG GK++ AQ++A+
Sbjct: 244 LSLEDYGLSDKLKERLEE---------RAEGILI--AGAPGAGKSTFAQALAE 285
>gnl|CDD|31145 COG0802, COG0802, Predicted ATPase or kinase [General function
prediction only].
Length = 149
Score = 29.8 bits (67), Expect = 3.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 364 NKGLILCFVGPPGVGKTSLAQSIAKATG 391
G ++ G G GKT+L + IAK G
Sbjct: 23 KAGDVVLLSGDLGAGKTTLVRGIAKGLG 50
>gnl|CDD|73296 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor..
Length = 147
Score = 29.7 bits (67), Expect = 3.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 373 GPPGVGKTSLAQSIAKATGRQYV 395
GP G GK+++A+ +AK G Y+
Sbjct: 6 GPAGSGKSTVAKLLAKKLGLPYL 28
>gnl|CDD|36214 KOG0996, KOG0996, KOG0996, Structural maintenance of chromosome
protein 4 (chromosome condensation complex Condensin,
subunit C) [Chromatin structure and dynamics, Cell cycle
control, cell division, chromosome partitioning].
Length = 1293
Score = 29.5 bits (66), Expect = 3.7
Identities = 19/120 (15%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 190 LSIKVAERQKILEAVSVKERLEMLLVFMESEISVLQVEKRIRSRVKRQMEKTQREYYLHE 249
S+K + E LE ++ + L+ + +K+++E+ Q +
Sbjct: 827 ASVKRLAELIEYLESQIAE-LEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAKKA 885
Query: 250 QMKAIQKELDN------------GEEGRDEISDFEARISKIRLSKEAREKALSELQKLRQ 297
++K +Q ++D E+ +++ EA I+K+ ++ + ++ +++ QK
Sbjct: 886 RIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLS 945
>gnl|CDD|31326 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 29.6 bits (66), Expect = 3.8
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMP 420
G I +GP G GKT+L + +A + + G + RR IG +P
Sbjct: 29 EPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRR-IGYVP 84
>gnl|CDD|30191 cd01673, dNK, Deoxyribonucleoside kinase (dNK) catalyzes the
phosphorylation of deoxyribonucleosides to yield
corresponding monophosphates (dNMPs). This family
consists of various deoxynucleoside kinases including
deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC
2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC
2.7.1.21) kinases. They are key enzymes in the salvage
of deoxyribonucleosides originating from extra- or
intracellular breakdown of DNA..
Length = 193
Score = 29.4 bits (66), Expect = 4.0
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 368 ILCFVGPPGVGKTSLAQSIAKATGRQYV 395
++ G G GK++LA+ +A+ G + V
Sbjct: 1 VIVVEGNIGAGKSTLAKELAEHLGYEVV 28
>gnl|CDD|30004 cd01394, radB, RadB. The archaeal protein radB shares similarity
radA, the archaeal functional homologue to the bacterial
RecA. The precise function of radB is unclear..
Length = 218
Score = 29.5 bits (66), Expect = 4.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 365 KGLILCFVGPPGVGKTSLAQSIAKATGRQ 393
+G + GPPG GKT++A +A T Q
Sbjct: 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQ 46
>gnl|CDD|39873 KOG4674, KOG4674, KOG4674, Uncharacterized conserved coiled-coil
protein [Function unknown].
Length = 1822
Score = 29.6 bits (66), Expect = 4.1
Identities = 33/194 (17%), Positives = 73/194 (37%), Gaps = 26/194 (13%)
Query: 122 EREDFLEAITQVLPDPTEDPV-ELEALSRSVIAEFSNYIKLNKKISPEVIGITSQIEGFS 180
E E+ A ++ EL+ L + + + S+ +L + ++ + ++
Sbjct: 791 ELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELE 850
Query: 181 KLADVIAANLSIKVAERQKILEAVS-VKERLEML---LVFMESEISVLQVEKRIRS---- 232
+ +L K+ +S +++RL+ L+ ++S+ S +
Sbjct: 851 SELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKE 910
Query: 233 ------------RVKRQMEKTQREYYLHEQMKAIQKELDNGEEGRDEISDFEARISKIRL 280
Q+ + Q EY EQ +++ +E R + EA+I +
Sbjct: 911 LEEITDLKEELTDALSQIREYQEEYSSLEQ--SLESVKSELDETR---LELEAKIESLHK 965
Query: 281 SKEAREKALSELQK 294
+ E+ LSEL+K
Sbjct: 966 KITSLEEELSELEK 979
>gnl|CDD|31609 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 29.5 bits (66), Expect = 4.2
Identities = 28/198 (14%), Positives = 71/198 (35%), Gaps = 6/198 (3%)
Query: 198 QKILEAVSVKERLEMLLVFMESEISVLQVEKRIRSRVKRQMEKTQREYYLHEQMKAIQKE 257
++I + + V + +V ++ ++R +++ + + K ++
Sbjct: 32 RRIKKGGFLGLLFSKTAVEVTKLAAVDSELRKFQTREAAKVKDAEAQLLKDPAEKKREER 91
Query: 258 LDNGEEGRDEISDFEARISKIRLSKEAR-EKALSELQKLRQMNPLSAESSVVRNYLDW-- 314
+ R S E + +++ S E E E +R++ + E +
Sbjct: 92 KAAKKIERSTPSLIERKTQEVKDSGEEIAEMMRDEKVPIRELEEIPPEFVALYKQEIQSP 151
Query: 315 LLGVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGP 374
++ + L+ + ++ L++ +I + ++ VGP
Sbjct: 152 TRLNLINELLRAGLELEILDMKDESYEDLRYFSEKLRKLLLSLIENLIVEQKRVIALVGP 211
Query: 375 PGVGKTSLAQSIAKATGR 392
GVGKT+ ++AK R
Sbjct: 212 TGVGKTT---TLAKLAAR 226
>gnl|CDD|31663 COG1474, CDC6, Cdc6-related protein, AAA superfamily ATPase [DNA
replication, recombination, and repair /
Posttranslational modification, protein turnover,
chaperones].
Length = 366
Score = 29.6 bits (66), Expect = 4.2
Identities = 45/234 (19%), Positives = 71/234 (30%), Gaps = 41/234 (17%)
Query: 371 FVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRA 430
GP G GKT+ + + + S + R Y +++ +
Sbjct: 47 IYGPTGTGKTATVKFVM----EELEESSANVEVVYINCLELRTPY------QVLSKILNK 96
Query: 431 KRSNPLLLL--DEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSD------ 482
PL EI K D ++ +LD VD EV Y L
Sbjct: 97 LGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDA--LVDKDGEVLYSLLRAPGENK 154
Query: 483 --VMFIMTANTLNIPLPLMDRM------EIIRIAGYTEEEKLQIAKNHLVKKVLTEHALK 534
V I +N L R+ I YT EE I + +
Sbjct: 155 VKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRE------------R 202
Query: 535 QEECCISDGVLLDIIRLFTHEAGVRSFE-RALMKIARKAVTKIVKNSDTTVSIN 587
EE + + D+++L S + R + I R+A + VS +
Sbjct: 203 VEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSED 256
>gnl|CDD|146027 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 29.5 bits (67), Expect = 4.3
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 13/44 (29%)
Query: 339 QDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSL 382
+ G+E++K + KG G GVGK++L
Sbjct: 21 KTGEGIEELKPLL-------------KGKTSVLAGQSGVGKSTL 51
>gnl|CDD|144046 pfam00308, Bac_DnaA, Bacterial dnaA protein.
Length = 219
Score = 29.2 bits (66), Expect = 4.4
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLK 428
L G G+GKT L +I R + + + VY ++ ++ ++ I++ K
Sbjct: 37 LFIYGGVGLGKTHLLHAIGNYALRNFPNLRV--VYLTSEEFL--NDFVDALRDNKIEAFK 92
Query: 429 RAKRSNPLLLLDEI 442
++ R+ LLL+D+I
Sbjct: 93 KSYRNVDLLLIDDI 106
>gnl|CDD|31438 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 29.4 bits (66), Expect = 4.6
Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 364 NKGLILCFVGPPGVGKTSLAQSIAKAT-----GRQYVRMSLGGVYDEADIRGHRRTYI-G 417
G ++ +GP G+GKT+ + +A + +++S Y D G +
Sbjct: 365 YDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRS 424
Query: 418 SMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRG 451
++ S + + PL L D +++ +L G
Sbjct: 425 AIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSG 458
>gnl|CDD|31317 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 29.4 bits (66), Expect = 4.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 364 NKGLILCFVGPPGVGKTSLAQSIA 387
KG I +GP G GK++L + +A
Sbjct: 26 PKGEITGILGPNGSGKSTLLKCLA 49
>gnl|CDD|110723 pfam01745, IPT, Isopentenyl transferase. Isopentenyl transferase /
dimethylallyl transferase synthesizes
isopentenyladensosine 5'-monophosphate, a cytokinin that
induces shoot formation on host plants infected with the
Ti plasmid.
Length = 232
Score = 29.3 bits (66), Expect = 5.0
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 12/76 (15%)
Query: 372 VGPPGVGKTSLAQSIAKATG---------RQYVRMSLG-GVYDEADIRGHRRTYIGSMPG 421
G GKT+ A ++AK TG + +++ G G A+++G RR Y+ +
Sbjct: 7 WGATCTGKTAEAIALAKETGWPVIVLDRVQCCSQLATGSGRPLPAELQGTRRIYLDN--R 64
Query: 422 RIIQSLKRAKRSNPLL 437
+ + + A+ ++ L
Sbjct: 65 PLSEGIIDAEEAHDRL 80
>gnl|CDD|39872 KOG4673, KOG4673, KOG4673, Transcription factor TMF, TATA element
modulatory factor [Transcription].
Length = 961
Score = 29.0 bits (64), Expect = 5.1
Identities = 27/151 (17%), Positives = 60/151 (39%), Gaps = 25/151 (16%)
Query: 189 NLSIKVAERQKILEAVSVKERLEML--------LVFMESEISVLQVEKRIRSRVKRQMEK 240
+L+ ++++ Q +L ++E+ E L ++S+L+ E+ ++ + +EK
Sbjct: 666 SLNERLSDSQTLLRINVLEEQGEKQELLSLNFSLPSSPIQLSLLRAEQ---GQLSKSLEK 722
Query: 241 T-QREYYLHEQMKAIQKELDNGE--------EGRDEISDFEARISKIRLSKEAREKALSE 291
R ++ A Q+E D E E R+ + + ++ L E + E
Sbjct: 723 ERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKHKQELQEVLLHVEL-IQKDLE 781
Query: 292 LQKLRQMN----PLSAESSVVRNYLDWLLGV 318
+K +++ SS V + L
Sbjct: 782 REKASRLDLERSTARINSSPVSSQLPSGSNE 812
>gnl|CDD|32641 COG2812, DnaX, DNA polymerase III, gamma/tau subunits [DNA
replication, recombination, and repair].
Length = 515
Score = 28.9 bits (64), Expect = 5.2
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 371 FVGPPGVGKTSLAQSIAKA 389
F GP GVGKT++A+ +AKA
Sbjct: 43 FSGPRGVGKTTIARILAKA 61
>gnl|CDD|133258 cd00882, Ras_like_GTPase, Ras-like GTPase superfamily. The Ras-like
superfamily of small GTPases consists of several
families with an extremely high degree of structural and
functional similarity. The Ras superfamily is divided
into at least four families in eukaryotes: the Ras, Rho,
Rab, and Sar1/Arf families. This superfamily also
includes proteins like the GTP translation factors,
Era-like GTPases, and G-alpha chain of the
heterotrimeric G proteins. Members of the Ras
superfamily regulate a wide variety of cellular
functions: the Ras family regulates gene expression, the
Rho family regulates cytoskeletal reorganization and
gene expression, the Rab and Sar1/Arf families regulate
vesicle trafficking, and the Ran family regulates
nucleocytoplasmic transport and microtubule
organization. The GTP translation factor family regulate
initiation, elongation, termination, and release in
translation, and the Era-like GTPase family regulates
cell division, sporulation, and DNA replication. Members
of the Ras superfamily are identified by the GTP binding
site, which is made up of five characteristic sequence
motifs, and the switch I and switch II regions.
Length = 157
Score = 29.0 bits (65), Expect = 5.6
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 371 FVGPPGVGKTSLAQSIAK 388
VG GVGKTSL +
Sbjct: 1 VVGDSGVGKTSLLNRLLG 18
>gnl|CDD|133370 cd04170, EF-G_bact, Elongation factor G (EF-G) subfamily.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA and
the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial binding
of EF-G as well. The dissociation of EF-G leaves the
ribosome ready to accept the next aminoacyl-tRNA into
the A site. This group contains only bacterial members.
Length = 268
Score = 29.1 bits (66), Expect = 5.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 369 LCFVGPPGVGKTSLAQSIAKATG 391
+ VG G GKT+LA+++ ATG
Sbjct: 2 IALVGHSGSGKTTLAEALLYATG 24
>gnl|CDD|37696 KOG2485, KOG2485, KOG2485, Conserved ATP/GTP binding protein
[General function prediction only].
Length = 335
Score = 28.7 bits (64), Expect = 6.0
Identities = 37/195 (18%), Positives = 68/195 (34%), Gaps = 29/195 (14%)
Query: 217 MESEISVLQVEKRIRSRVKRQMEKTQREYYLHEQMKAIQKELDNGEEGRDEISDF--EAR 274
S+ + K M + ++ + ++AIQ L D E R
Sbjct: 3 TRKTWSIAREAGDAVIFAKYNMPRRWFPGHMAKALRAIQNRLPL--------VDCIIEVR 54
Query: 275 ISKIRLSKE--------AREKALSELQKLRQMNPLSAESSVVRNYLDWLLGVPWDKKSKT 326
++I LS + + L K+ +P E + YL+W + K
Sbjct: 55 DARIPLSSRNELFQDFLPPKPRIIVLNKMDLADPK--EQKKIIQYLEWQNLESYIKLDCN 112
Query: 327 KKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSI 386
K +L K+ + E L +R + ++ ++ VG P VGK+SL ++
Sbjct: 113 KDCNKQVSPLL--------KILTILSEELVRFIRTLNSEYNVM-VVGVPNVGKSSLINAL 163
Query: 387 AKATGRQYVRMSLGG 401
R+ +G
Sbjct: 164 RNVHLRKKKAARVGA 178
>gnl|CDD|37891 KOG2680, KOG2680, KOG2680, DNA helicase TIP49, TBP-interacting
protein [Transcription].
Length = 454
Score = 28.8 bits (64), Expect = 6.2
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 494 IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFT 553
IP+ L+DRM II YTEE+ +KK+L ++E+ ++ LD++
Sbjct: 342 IPIDLLDRMLIISTQPYTEED---------IKKIL-RIRCQEEDVEMNPDA-LDLLTKIG 390
Query: 554 HEAGVR 559
+R
Sbjct: 391 EATSLR 396
>gnl|CDD|73052 cd03293, ABC_NrtD_SsuB_transporters, NrtD and SsuB are the
ATP-binding subunits of the bacterial ABC-type nitrate
and sulfonate transport systems, respectively. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 220
Score = 28.9 bits (65), Expect = 6.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 365 KGLILCFVGPPGVGKTSLAQSIA 387
+G + VGP G GK++L + IA
Sbjct: 29 EGEFVALVGPSGCGKSTLLRIIA 51
>gnl|CDD|31412 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 408
Score = 28.6 bits (64), Expect = 6.6
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 369 LCFVGPPGVGKTSLAQSIAK 388
+ +GP G GKT LAQ++AK
Sbjct: 100 ILLIGPTGSGKTLLAQTLAK 119
>gnl|CDD|72973 cd03214, ABC_Iron-Siderophores_B12_Hemin, ABC transporters,
involved in the uptake of siderophores, heme, and
vitamin B12, are widely conserved in bacteria and
archaea. Only very few species lack representatives of
the siderophore family transporters. The E. coli BtuCD
protein is an ABC transporter mediating vitamin B12
uptake. The two ATP-binding cassettes (BtuD) are in
close contact with each other, as are the two
membrane-spanning subunits (BtuC); this arrangement is
distinct from that observed for the E. coli lipid
flippase MsbA. The BtuC subunits provide 20
transmembrane helices grouped around a translocation
pathway that is closed to the cytoplasm by a gate
region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters..
Length = 180
Score = 28.9 bits (65), Expect = 6.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 364 NKGLILCFVGPPGVGKTSLAQSIAK 388
G I+ +GP G GK++L +++A
Sbjct: 23 EAGEIVGILGPNGAGKSTLLKTLAG 47
>gnl|CDD|36247 KOG1029, KOG1029, KOG1029, Endocytic adaptor protein intersectin
[Signal transduction mechanisms, Intracellular
trafficking, secretion, and vesicular transport].
Length = 1118
Score = 28.5 bits (63), Expect = 6.7
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 223 VLQVEKRIRSRV--KRQMEKTQREYYLHEQMKAIQKELDNGEEGRDEISDFEARISKIRL 280
+ + ++R R V K + E+ ++E EQ + Q EL+ E + EI R + +
Sbjct: 336 LEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIE--RQREEERKK 393
Query: 281 SKEAREKALSELQKLRQM 298
E RE A EL+K RQ+
Sbjct: 394 EIERREAAREELEKQRQL 411
>gnl|CDD|31564 COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 398
Score = 28.8 bits (64), Expect = 6.8
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Query: 353 EYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHR 412
+ L ++ + + I+ +GP VGKT+L + + K + + + D+R R
Sbjct: 24 KLLPRLIKKLDLRPFIILILGPRQVGKTTLLKLLIKGLLEEIIY------INFDDLRLDR 77
Query: 413 RTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDK 444
+ + R LK ++ + LDEI
Sbjct: 78 IELLDLL--RAYIELKEREK--SYIFLDEIQN 105
>gnl|CDD|34241 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 28.7 bits (64), Expect = 6.8
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 364 NKGLILCFVGPPGVGKTSLAQSIAKA--TGRQYVRMSLGGVYDEADIRGHRRTYIGSMPG 421
G L +GP G GK++LA+ + VR+ D AD+R R +G G
Sbjct: 360 QAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRL------DGADLRQWDREQLGRHIG 413
Query: 422 RIIQSL 427
+ Q +
Sbjct: 414 YLPQDV 419
>gnl|CDD|30003 cd01393, recA_like, RecA is a bacterial enzyme which has roles in
homologous recombination, DNA repair, and the induction
of the SOS response. RecA couples ATP hydrolysis to DNA
strand exchange. While prokaryotes have a single RecA
protein, eukaryotes have multiple RecA homologs such as
Rad51, DMC1 and Rad55/57. Archaea have the RecA-like
homologs radA and radB..
Length = 226
Score = 28.6 bits (64), Expect = 6.8
Identities = 19/80 (23%), Positives = 26/80 (32%), Gaps = 11/80 (13%)
Query: 365 KGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGG--VYDEADIRGHRRTYIGSMPGR 422
G I G G GKT L +A L G VY + + G+
Sbjct: 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE---------GAFRPE 68
Query: 423 IIQSLKRAKRSNPLLLLDEI 442
+ L +P +LD I
Sbjct: 69 RLVQLAVRFGLDPEEVLDNI 88
>gnl|CDD|34291 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 28.7 bits (64), Expect = 6.8
Identities = 16/54 (29%), Positives = 22/54 (40%)
Query: 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIG 417
+ G + +GP G GKT+L I T Q + G D + HR G
Sbjct: 29 DPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82
>gnl|CDD|33687 COG3899, COG3899, Predicted ATPase [General function prediction
only].
Length = 849
Score = 28.4 bits (63), Expect = 7.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 360 RVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQ 393
RV K +G ++ G G+GK++L + K +Q
Sbjct: 18 RVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQ 51
>gnl|CDD|34269 COG4650, RtcR, Sigma54-dependent transcription regulator containing
an AAA-type ATPase domain and a DNA-binding domain
[Transcription / Signal transduction mechanisms].
Length = 531
Score = 28.5 bits (63), Expect = 7.3
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 20/111 (18%)
Query: 350 RIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDE---A 406
R+IE ++ I+++ IL GP G GK+ LA+ I + + R G + E A
Sbjct: 195 RMIE--QIERVAIRSRAPIL-LNGPTGAGKSFLARRIYEL---KQARHQFSGAFVEVNCA 248
Query: 407 DIRGHRRTYIGSMPGRIIQSLKRAKRSNP---------LLLLDEIDKMGSD 448
+RG T + ++ G + + A+ S +L LDEI ++G+D
Sbjct: 249 TLRGD--TAMSALFGHVKGAFTGARESREGLLRSADGGMLFLDEIGELGAD 297
>gnl|CDD|30898 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 28.7 bits (64), Expect = 7.5
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 10/51 (19%)
Query: 345 EKVKERIIEYLAVQMRVI-------KNKGLILCFVGPPGVGKTSLAQSIAK 388
E ++E +IE L +V + K ++ FVG GVGKT+ +IAK
Sbjct: 111 EALREALIEILRPVDKVDLPLEIPKEKKPFVILFVGVNGVGKTT---TIAK 158
>gnl|CDD|37153 KOG1942, KOG1942, KOG1942, DNA helicase, TBP-interacting protein
[Replication, recombination and repair].
Length = 456
Score = 28.4 bits (63), Expect = 7.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 359 MRVIKNKGLILCFVGPPGVGKTSLAQSIAKATG 391
++ K G + GPPG GKT+LA +I++ G
Sbjct: 57 IKSKKMAGRAVLLAGPPGTGKTALALAISQELG 89
>gnl|CDD|37400 KOG2189, KOG2189, KOG2189, Vacuolar H+-ATPase V0 sector, subunit a
[Energy production and conversion].
Length = 829
Score = 28.3 bits (63), Expect = 7.8
Identities = 14/76 (18%), Positives = 37/76 (48%), Gaps = 13/76 (17%)
Query: 236 RQMEKTQREY-YLHEQMKAIQKELDNGEE------GRD------EISDFEARISKIRLSK 282
R+ ++ +R+ +L ++K L + +E R+ ++ E+ + ++ +K
Sbjct: 56 RRCDEMERKLRFLESEIKKAGIPLPDLDESPPAPPPREIIDLEEQLEKLESELRELNANK 115
Query: 283 EAREKALSELQKLRQM 298
EA + +EL +L+ +
Sbjct: 116 EALKANYNELLELKYV 131
>gnl|CDD|147709 pfam05704, Caps_synth, Capsular polysaccharide synthesis protein.
This family consists of several capsular polysaccharide
proteins. Capsular polysaccharide (CPS) is a major
virulence factor in Streptococcus pneumoniae.
Length = 279
Score = 28.4 bits (64), Expect = 7.8
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 750 VLIPEENIKDLMDIPENVKNGLE--IIPVSFMGEVLKHALLR 789
+L+ ++NI + +DIP+ + E I + ++L+ LL
Sbjct: 82 ILLTKDNISEYVDIPDFIIEKFESGKISRAHFSDILRLNLLA 123
>gnl|CDD|33644 COG3854, SpoIIIAA, ncharacterized protein conserved in bacteria
[Function unknown].
Length = 308
Score = 28.4 bits (63), Expect = 8.4
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 361 VIKNKGLILCFVGPPGVGKTSLAQSIAK--ATGRQYVRMSLGGVYDE 405
+ +N L +GPP VGKT+L + IA+ + G G+ DE
Sbjct: 132 LYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDE 178
>gnl|CDD|36601 KOG1387, KOG1387, KOG1387, Glycosyltransferase [Cell
wall/membrane/envelope biogenesis].
Length = 465
Score = 28.4 bits (63), Expect = 8.7
Identities = 17/94 (18%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 272 EARISKIRLSKEAREKALSELQKLRQMNPLSAESSVVRNYLDWLLGVPWDKKSKTKKNLD 331
EA +S I+L + + ++++ + L+ E + ++ + VP++K +
Sbjct: 300 EASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKI-PKHVQFEKNVPYEKLVELLGKAT 358
Query: 332 FAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNK 365
+ + +HFG+ ++EY+A + I +
Sbjct: 359 IGVHTMWNEHFGIS-----VVEYMAAGLIPIVHN 387
>gnl|CDD|31319 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 28.3 bits (63), Expect = 8.7
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 363 KNKGLILCFVGPPGVGKTSLAQSIA 387
KG + +GP G GK++L + +
Sbjct: 27 IEKGERVLLIGPNGSGKSTLLKLLN 51
>gnl|CDD|57925 cd01854, YjeQ_engC, YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis)
represents a protein family whose members are broadly
conserved in bacteria and have been shown to be
essential to the growth of E. coli and B. subtilis.
Proteins of the YjeQ family contain all sequence motifs
typical of the vast class of P-loop-containing GTPases,
but show a circular permutation, with a G4-G1-G3 pattern
of motifs as opposed to the regular G1-G3-G4 pattern
seen in most GTPases. All YjeQ family proteins display a
unique domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain. This domain architecture suggests a role for
YjeQ as a regulator of translation..
Length = 287
Score = 28.2 bits (63), Expect = 8.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 365 KGLILCFVGPPGVGKTSL 382
KG VG GVGK++L
Sbjct: 160 KGKTSVLVGQSGVGKSTL 177
>gnl|CDD|147094 pfam04762, IKI3, IKI3 family. Members of this family are
components of the elongator multi-subunit component of a
novel RNA polymerase II holoenzyme for transcriptional
elongation. This region contains WD40 like repeats.
Length = 918
Score = 28.4 bits (64), Expect = 8.9
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 286 EKALSELQKLRQMNPLSAESSVVRNYLDWLLGV 318
E AL + +LR+ + AE ++ +L +L+ V
Sbjct: 821 EDALQLIAELREEDSEQAEEALK--HLCFLVDV 851
>gnl|CDD|72984 cd03225, ABC_cobalt_CbiO_domain1, Domain I of the ABC component of
a cobalt transport family found in bacteria, archaea,
and eukaryota. The transition metal cobalt is an
essential component of many enzymes and must be
transported into cells in appropriate amounts when
needed. This ABC transport system of the CbiMNQO family
is involved in cobalt transport in association with the
cobalamin (vitamin B12) biosynthetic pathways. Most of
cobalt (Cbi) transport systems possess a separate CbiN
component, the cobalt-binding periplasmic protein, and
they are encoded by the conserved gene cluster cbiMNQO.
Both the CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems..
Length = 211
Score = 28.2 bits (63), Expect = 9.1
Identities = 13/54 (24%), Positives = 21/54 (38%)
Query: 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIG 417
KG + VGP G GK++L + + G + + G R +G
Sbjct: 25 KKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVG 78
>gnl|CDD|31354 COG1160, COG1160, Predicted GTPases [General function prediction
only].
Length = 444
Score = 28.2 bits (63), Expect = 9.3
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 343 GLEKVKERIIEYLAVQMRVIK---NKGLILCFVGPPGVGKTSLAQSIAK 388
G+ + + ++E L + + + +G P VGK+SL +I
Sbjct: 152 GIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILG 200
>gnl|CDD|30875 COG0529, CysC, Adenylylsulfate kinase and related kinases
[Inorganic ion transport and metabolism].
Length = 197
Score = 28.3 bits (63), Expect = 9.5
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 363 KNKGLILCFVGPPGVGKTSLAQSIAKA 389
KG ++ F G G GK+++A ++ +
Sbjct: 20 GQKGAVIWFTGLSGSGKSTIANALEEK 46
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail. The myosin molecule is a
multi-subunit complex made up of two heavy chains and
four light chains it is a fundamental contractile
protein found in all eukaryote cell types. This family
consists of the coiled-coil myosin heavy chain tail
region. The coiled-coil is composed of the tail from two
molecules of myosin. These can then assemble into the
macromolecular thick filament. The coiled-coil region
provides the structural backbone the thick filament.
Length = 859
Score = 28.1 bits (63), Expect = 9.5
Identities = 49/211 (23%), Positives = 96/211 (45%), Gaps = 41/211 (19%)
Query: 168 EVIGITSQIEGFSKL----------ADVIAANLSIKVAERQKIL-EAVSVKERL-----E 211
EV + +Q++ +K + + L +K+ E Q+ L + S K RL +
Sbjct: 160 EVDDLLAQLDQIAKAKLNAEKKAKQLESQLSELQVKLDELQRQLNDLTSQKSRLQSENSD 219
Query: 212 MLLVFMESEISVLQVEKRIRSRVKRQMEKTQR--------EYYLHEQMKAIQKELDNGEE 263
+ E+E V + K ++S+++ Q+E+ +R L Q++ ++ +LD+ E
Sbjct: 220 LTRQLEEAEAQVSNLSK-LKSQLESQLEEAKRSLEEESRERANLQAQLRQLEHDLDSLRE 278
Query: 264 GRDEISDFEARISKIRLSKEAREKALSELQKLRQMNPLSAESSVVRNYLDWLLGVPWDKK 323
+E S+ +A + + +LS KA +E+Q+ R + +E ++ L+ L KK
Sbjct: 279 QLEEESEAKAELER-QLS-----KANAEIQQWR--SKFESEGALRAEELEEL------KK 324
Query: 324 SKTKK--NLDFAIRILDQDHFGLEKVKERII 352
+K L+ A + LEK K R+
Sbjct: 325 KLNQKISELEEAAEAANAKCDSLEKTKSRLQ 355
>gnl|CDD|72980 cd03221, ABCF_EF-3, ABCF_EF-3 Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions..
Length = 144
Score = 28.1 bits (63), Expect = 9.9
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 17/84 (20%)
Query: 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPG-- 421
N G + VG G GK++L + IA DE + IG
Sbjct: 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEP-----------DEGIVTWGSTVKIGYFEQLS 72
Query: 422 ---RIIQSLKRAKRSNP-LLLLDE 441
++ +L + NP LLLLDE
Sbjct: 73 GGEKMRLALAKLLLENPNLLLLDE 96
>gnl|CDD|146702 pfam04201, TPD52, Tumour protein D52 family. The hD52 gene was
originally identified through its elevated expression
level in human breast carcinoma. Cloning of D52
homologues from other species has indicated that D52 may
play roles in calcium-mediated signal transduction and
cell proliferation. Two human homologues of hD52, hD53
and hD54, have also been identified, demonstrating the
existence of a novel gene/protein family. These proteins
have an amino terminal coiled-coil that allows members
to form homo- and heterodimers with each other.
Length = 162
Score = 28.0 bits (62), Expect = 10.0
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 262 EEGRDEISDFEARISKIRLSKEAREKALSELQKLRQMNPLS 302
EE R E++ E IS +R A+EK L+EL++ + PLS
Sbjct: 32 EELRTELAKLEEEISTLRQVLAAKEKHLAELKRKLGLTPLS 72
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.317 0.136 0.374
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 9,611,597
Number of extensions: 534133
Number of successful extensions: 2162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2116
Number of HSP's successfully gapped: 280
Length of query: 820
Length of database: 6,263,737
Length adjustment: 102
Effective length of query: 718
Effective length of database: 4,059,619
Effective search space: 2914806442
Effective search space used: 2914806442
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.7 bits)