BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780270|ref|YP_003064683.1| ATP-dependent protease La
[Candidatus Liberibacter asiaticus str. psy62]
         (820 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 820

 Score = 1661 bits (4301), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 820/820 (100%), Positives = 820/820 (100%)

Query: 1   MNQSDEKREYVTCEDESKDRCGADGIIYPLLPLRDIVVFPYMIVPLFVGREKSVRALDEA 60
           MNQSDEKREYVTCEDESKDRCGADGIIYPLLPLRDIVVFPYMIVPLFVGREKSVRALDEA
Sbjct: 1   MNQSDEKREYVTCEDESKDRCGADGIIYPLLPLRDIVVFPYMIVPLFVGREKSVRALDEA 60

Query: 61  MNSHKKIILVTQMNSNDENPIASSVYRIGTIVDIVQILRLPDGTVKILVEGSVRARIVEY 120
           MNSHKKIILVTQMNSNDENPIASSVYRIGTIVDIVQILRLPDGTVKILVEGSVRARIVEY
Sbjct: 61  MNSHKKIILVTQMNSNDENPIASSVYRIGTIVDIVQILRLPDGTVKILVEGSVRARIVEY 120

Query: 121 IEREDFLEAITQVLPDPTEDPVELEALSRSVIAEFSNYIKLNKKISPEVIGITSQIEGFS 180
           IEREDFLEAITQVLPDPTEDPVELEALSRSVIAEFSNYIKLNKKISPEVIGITSQIEGFS
Sbjct: 121 IEREDFLEAITQVLPDPTEDPVELEALSRSVIAEFSNYIKLNKKISPEVIGITSQIEGFS 180

Query: 181 KLADVIAANLSIKVAERQKILEAVSVKERLEMLLVFMESEISVLQVEKRIRSRVKRQMEK 240
           KLADVIAANLSIKVAERQKILEAVSVKERLEMLLVFMESEISVLQVEKRIRSRVKRQMEK
Sbjct: 181 KLADVIAANLSIKVAERQKILEAVSVKERLEMLLVFMESEISVLQVEKRIRSRVKRQMEK 240

Query: 241 TQREYYLHEQMKAIQKELDNGEEGRDEISDFEARISKIRLSKEAREKALSELQKLRQMNP 300
           TQREYYLHEQMKAIQKELDNGEEGRDEISDFEARISKIRLSKEAREKALSELQKLRQMNP
Sbjct: 241 TQREYYLHEQMKAIQKELDNGEEGRDEISDFEARISKIRLSKEAREKALSELQKLRQMNP 300

Query: 301 LSAESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMR 360
           LSAESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMR
Sbjct: 301 LSAESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMR 360

Query: 361 VIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMP 420
           VIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMP
Sbjct: 361 VIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMP 420

Query: 421 GRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDL 480
           GRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDL
Sbjct: 421 GRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDL 480

Query: 481 SDVMFIMTANTLNIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCI 540
           SDVMFIMTANTLNIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCI
Sbjct: 481 SDVMFIMTANTLNIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCI 540

Query: 541 SDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVPRY 600
           SDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVPRY
Sbjct: 541 SDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVPRY 600

Query: 601 KYGKIEGEDQVGIVTGLAWTEVGGEILTVEGVIMPGKGEITITGNLKEIMKESILAASSY 660
           KYGKIEGEDQVGIVTGLAWTEVGGEILTVEGVIMPGKGEITITGNLKEIMKESILAASSY
Sbjct: 601 KYGKIEGEDQVGIVTGLAWTEVGGEILTVEGVIMPGKGEITITGNLKEIMKESILAASSY 660

Query: 661 VRSKATTFGIIPSAFNEINIHVHVPEGATPKDGPSAGIAMATAIVSIMTCIPVYKNVAMT 720
           VRSKATTFGIIPSAFNEINIHVHVPEGATPKDGPSAGIAMATAIVSIMTCIPVYKNVAMT
Sbjct: 661 VRSKATTFGIIPSAFNEINIHVHVPEGATPKDGPSAGIAMATAIVSIMTCIPVYKNVAMT 720

Query: 721 GELTLRGRVLPIGGLKEKLLAALRAGVTKVLIPEENIKDLMDIPENVKNGLEIIPVSFMG 780
           GELTLRGRVLPIGGLKEKLLAALRAGVTKVLIPEENIKDLMDIPENVKNGLEIIPVSFMG
Sbjct: 721 GELTLRGRVLPIGGLKEKLLAALRAGVTKVLIPEENIKDLMDIPENVKNGLEIIPVSFMG 780

Query: 781 EVLKHALLRMPDPLESEGNKSIPLSVEGIVVGKDGRSVAH 820
           EVLKHALLRMPDPLESEGNKSIPLSVEGIVVGKDGRSVAH
Sbjct: 781 EVLKHALLRMPDPLESEGNKSIPLSVEGIVVGKDGRSVAH 820


>gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 853

 Score = 40.8 bits (94), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 21/131 (16%)

Query: 369 LCFVGPPGVGKTSLAQSIAK---ATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQ 425
             F+GP GVGKT L +S+A+         +R+ +    ++  +       IGS PG +  
Sbjct: 601 FMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSV----SRLIGSPPGYVGY 656

Query: 426 ----SLKRAKRSNP--LLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYD 479
               +L  A R +P  ++L DEI+K  SD+       LL+VLD  + +      +    D
Sbjct: 657 EEGGALTEAVRRHPYQVVLFDEIEKAHSDVHN----ILLQVLDDGRLTDSQGRTV----D 708

Query: 480 LSDVMFIMTAN 490
             + + IMT+N
Sbjct: 709 FRNTLIIMTSN 719



 Score = 26.9 bits (58), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 15/82 (18%)

Query: 371 FVGPPGVGKTSLAQSIAKA----------TGRQYVRMSLGGVYDEADIRGHRRTYIGSMP 420
            +G PGVGKT++ + +A             G++ + + +G +   A  RG     + S+ 
Sbjct: 204 LIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLL 263

Query: 421 GRIIQSLKRAKRSNPLLLLDEI 442
             I     R++    +L +DE+
Sbjct: 264 CEI-----RSEDGEIILFIDEL 280


>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
          Length = 647

 Score = 40.4 bits (93), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 16/115 (13%)

Query: 339 QDHFGLEKVKE---RIIEYLAVQMRVIKNKGLI---LCFVGPPGVGKTSLAQSIAKATGR 392
           +D  G+++ KE    I+++L    +  +  G I   +  VGPPG GKT LA+++A     
Sbjct: 148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANV 207

Query: 393 QYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNP-LLLLDEIDKMG 446
            +  +S G  + E         ++G    R+    ++AK ++P ++ +DEID +G
Sbjct: 208 PFFTIS-GSDFVE--------LFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVG 253


>gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 334

 Score = 38.5 bits (88), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 80/182 (43%), Gaps = 40/182 (21%)

Query: 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLK 428
           + FVGPPG+GKT+LAQ +A+  G  + R + G V  +A   G     + ++  R +    
Sbjct: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDRDV---- 108

Query: 429 RAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYL-------EVEYDLS 481
                   L +DEI ++        S  + E+L PA     +D  +        V+ +LS
Sbjct: 109 --------LFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152

Query: 482 DVMFIMTANTLNIPL---PLMDRMEI-IRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEE 537
              F + A T  + L   PL DR  I IR+  Y E E L+       K  LT  A+  E 
Sbjct: 153 --RFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDLKTIVQRGAK--LTGLAVTDEA 207

Query: 538 CC 539
            C
Sbjct: 208 AC 209


>gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 798

 Score = 38.1 bits (87), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 14/102 (13%)

Query: 368 ILCFV--GPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIR---GHRRTYIGSMPGR 422
           I C+V  GP GVGKT +++ +A A G Q +R  +    +   +    G    Y+G   G 
Sbjct: 507 IGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGG 566

Query: 423 IIQSLKRAKRSNP--LLLLDEIDKMGSDLRGDPSAALLEVLD 462
           I   L  +   NP  ++LLDEI+K   D+       LL+++D
Sbjct: 567 I---LADSVDQNPYSVVLLDEIEKSHPDVLN----ILLQIMD 601



 Score = 36.6 bits (83), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 75/174 (43%), Gaps = 29/174 (16%)

Query: 317 GVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILC------ 370
           G   D ++KT  NL  A+     D    EKVK+  ++ L  +   I     ILC      
Sbjct: 170 GFVNDYQAKTDLNLFPALSAYCVDL--TEKVKKGKVDILVGRHEEINRTIQILCRRSKNN 227

Query: 371 --FVGPPGVGKTSLAQSIAKAT----------GRQYVRMSLGGVYDEADIRGHRRTYIGS 418
             +VG PGVGKT++A+  AK            G +   + +G +     I G R  Y G 
Sbjct: 228 PLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNL-----IAGTR--YRGD 280

Query: 419 MPGRIIQSLKRAKR-SNPLLLLDEIDKM-GSDLRGDPSAALLEVLDPAQNSSFV 470
              RI + +K  +  +N +L +DEI  + G+      S     +L PA +S  V
Sbjct: 281 FEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAV 334


>gi|254780334|ref|YP_003064747.1| DNA repair protein RadA [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 479

 Score = 32.7 bits (73), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 675 FNEINIHVHVPEGATPKDGPSAGIAMATAIVSIMTCIPVYKNVAMTGELTLRGRVLPIGG 734
           F   ++H+++  G    + P+A +A+A A++S +  IP+  +    GE++L G V  +G 
Sbjct: 353 FGNHDVHLNIAGGYRISE-PAADVAVAAALISSILSIPLPSDFVYFGEVSLSGSVRAVGH 411

Query: 735 LKEKLLAALRAGVTKVLIPE 754
           ++++L  A + G    + PE
Sbjct: 412 MQQRLKEAEKIGFLSGVFPE 431


>gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 437

 Score = 31.2 bits (69), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 21/29 (72%)

Query: 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRM 397
           +  VGP GVGKT++++ +A+  G  ++++
Sbjct: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKV 84


>gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 803

 Score = 30.4 bits (67), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 725 LRGRVLPIGGLKEKLLAALRAGVTKVLIPEENIKDLMDIPENVKNGLEIIPVSFMG 780
           L+ RVLPI   KEKLL A R  +T +    ++ +      +N  + L+  PV FM 
Sbjct: 122 LKARVLPISLHKEKLLYAWR--ITDITSERKDQEKFFRELQNAIDYLDHSPVGFMS 175


>gi|254780619|ref|YP_003065032.1| primosome assembly protein PriA [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 731

 Score = 30.0 bits (66), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 25/93 (26%)

Query: 342 FGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQS-IAK------------ 388
           FG+E++ E + EY  +    I +  L        G G+  L  S IAK            
Sbjct: 493 FGIERIAEEVCEYFPLARISILSSDL------EGGGGRLQLQLSAIAKGEIDIIIGTQLV 546

Query: 389 ATGRQYVRMSLGGVYD------EADIRGHRRTY 415
           A G  + RMSL GV D       AD+R   RT+
Sbjct: 547 AKGHNFPRMSLVGVVDGDLGLTNADLRSSERTF 579


>gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 257

 Score = 29.6 bits (65), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 9/94 (9%)

Query: 317 GVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPG 376
             P + K+  K N    I+ L++ +     +++       + + V++ + +I+   GP G
Sbjct: 3   NTPINSKNPPKNNFAVEIKFLNKWYGNFHALRD-------INLNVLRGERVII--AGPSG 53

Query: 377 VGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRG 410
            GK++L + I      Q   + + G+    DIR 
Sbjct: 54  SGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRN 87


>gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 424

 Score = 29.6 bits (65), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 14/81 (17%)

Query: 371 FVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRA 430
            VGP G GKT LAQ++A+     +  M+      EA        Y+G     II  L +A
Sbjct: 118 LVGPTGCGKTYLAQTLARIIDVPFT-MADATTLTEA-------GYVGEDVENIILKLLQA 169

Query: 431 KRSN------PLLLLDEIDKM 445
              N       ++ +DE+DK+
Sbjct: 170 ADYNVERAQRGIVYIDEVDKI 190


>gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 504

 Score = 29.6 bits (65), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 352 IEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQY 394
           I+ L  QM  ++   LI+   G PG+GKTSLA +IA      Y
Sbjct: 206 IQTLDKQMGGLQRSDLIII-AGRPGMGKTSLATNIAYNVADAY 247


>gi|255764507|ref|YP_003065323.2| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 222

 Score = 27.7 bits (60), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 9/29 (31%), Positives = 19/29 (65%)

Query: 361 VIKNKGLILCFVGPPGVGKTSLAQSIAKA 389
            + ++G++L    P GVGK+++A+ + K 
Sbjct: 10  TVNHRGMMLIISSPSGVGKSTIARHLLKC 38


>gi|254780766|ref|YP_003065179.1| recombination protein F [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 375

 Score = 27.3 bits (59), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 371 FVGPPGVGKTSLAQSIAKAT-GRQYVRMSLGGV 402
           FVG  GVGKT++ ++I+  + GR + R S   V
Sbjct: 32  FVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64


>gi|254780487|ref|YP_003064900.1| dithiobiotin synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 217

 Score = 27.3 bits (59), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 377 VGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMP 420
           VGKT  A ++  A    Y +    G+Y+E D +   R  IG +P
Sbjct: 14  VGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHR--IGRIP 55


>gi|254781083|ref|YP_003065496.1| hypothetical protein CLIBASIA_04925 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 160

 Score = 26.2 bits (56), Expect = 2.4,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 55/149 (36%), Gaps = 43/149 (28%)

Query: 33  LRDIVVFPYMIVPLFVGREKSVRALDEAMNSHKKIILVTQMNSNDENPIASSVYRIGTIV 92
           L  + +  +  V  FV R KS   + EA+  +KK+  V   +  + N  +SSV R     
Sbjct: 11  LVQVSILVFCFVSHFVQR-KSFADVHEALERYKKVARVVGPHIPNSNVFSSSVRR----- 64

Query: 93  DIVQILRLPDGTVKILVEGSVRARIVEYIEREDFLEAITQVLPDPTEDPV---------E 143
                                      + ER D + A+ Q L D     V         +
Sbjct: 65  -------------------------TYWSERGDIINALDQDLQDVESIEVFEYLKTRLSD 99

Query: 144 LEALSRSVIAEFSNYIKLNKKISPEVIGI 172
           LEA  RS+   F+ Y    KK+ P VI +
Sbjct: 100 LEAHRRSMSFYFAKY---PKKVGPSVIDV 125


>gi|254780480|ref|YP_003064893.1| 2'-deoxycytidine 5'-triphosphate deaminase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 367

 Score = 25.4 bits (54), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 273 ARISKIRLSKEAREKALSELQKLRQMNPL 301
           +R+S+IR  KE +  +  EL  L +++PL
Sbjct: 154 SRLSQIRFVKERKFCSQEELSALHELSPL 182


>gi|254780810|ref|YP_003065223.1| transcription termination factor Rho [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 423

 Score = 25.0 bits (53), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 365 KGLILCFVGPPGVGKTSLAQSIAKATGRQY 394
           KG     V PP  GKT L Q+IA +  + +
Sbjct: 173 KGQRSLIVAPPRTGKTILLQNIAHSIKKNH 202


>gi|254780419|ref|YP_003064832.1| aspartyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 622

 Score = 25.0 bits (53), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 3/150 (2%)

Query: 314 WLLGVPWDKKSKTKKNLDFAIRILDQDHFGLEKVK-ERIIEYLAVQMRVIKNKGLILCFV 372
           W++  P+ + ++ +K +DFA         G+E +K   ++   A Q  ++ N G  +   
Sbjct: 436 WIMDFPFYEWNEEEKKIDFAHNPFTMPQGGMESLKGNDLLSIKAFQYDLVCN-GFEIASG 494

Query: 373 GPPGVGKTSLAQSIAK-ATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAK 431
           G        + Q+ +     ++ V    GG+Y            I +   RI+  L  AK
Sbjct: 495 GIRNHMSEVMLQAFSNVGISKEVVENRFGGLYRAFQCGMPPHGGIAAGIDRIVMLLLGAK 554

Query: 432 RSNPLLLLDEIDKMGSDLRGDPSAALLEVL 461
               + L          L G PS   +E L
Sbjct: 555 NVREVSLFPMSQNFCDLLMGSPSTVSVEQL 584


>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1775

 Score = 24.6 bits (52), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 361 VIKNKGLILCFVGPPGVGKTSLAQSIAKAT 390
           VI  K LI+   GPPG GK+    +I  A 
Sbjct: 416 VINGKNLII--EGPPGTGKSQTITNIIAAA 443


>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 348

 Score = 24.3 bits (51), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)

Query: 346 KVKERIIEYLAVQMRVIKN----KGLILCFVGPPGVGKTSLAQSI 386
           K  +++ EY  V   +  N    KG IL  +G  G GK++L +SI
Sbjct: 31  KKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSI 75


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.136    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 503,553
Number of Sequences: 1233
Number of extensions: 21152
Number of successful extensions: 106
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 86
Number of HSP's gapped (non-prelim): 30
length of query: 820
length of database: 328,796
effective HSP length: 82
effective length of query: 738
effective length of database: 227,690
effective search space: 168035220
effective search space used: 168035220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 42 (20.8 bits)