BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str. psy62] (820 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str. psy62] Length = 820 Score = 1661 bits (4301), Expect = 0.0, Method: Compositional matrix adjust. Identities = 820/820 (100%), Positives = 820/820 (100%) Query: 1 MNQSDEKREYVTCEDESKDRCGADGIIYPLLPLRDIVVFPYMIVPLFVGREKSVRALDEA 60 MNQSDEKREYVTCEDESKDRCGADGIIYPLLPLRDIVVFPYMIVPLFVGREKSVRALDEA Sbjct: 1 MNQSDEKREYVTCEDESKDRCGADGIIYPLLPLRDIVVFPYMIVPLFVGREKSVRALDEA 60 Query: 61 MNSHKKIILVTQMNSNDENPIASSVYRIGTIVDIVQILRLPDGTVKILVEGSVRARIVEY 120 MNSHKKIILVTQMNSNDENPIASSVYRIGTIVDIVQILRLPDGTVKILVEGSVRARIVEY Sbjct: 61 MNSHKKIILVTQMNSNDENPIASSVYRIGTIVDIVQILRLPDGTVKILVEGSVRARIVEY 120 Query: 121 IEREDFLEAITQVLPDPTEDPVELEALSRSVIAEFSNYIKLNKKISPEVIGITSQIEGFS 180 IEREDFLEAITQVLPDPTEDPVELEALSRSVIAEFSNYIKLNKKISPEVIGITSQIEGFS Sbjct: 121 IEREDFLEAITQVLPDPTEDPVELEALSRSVIAEFSNYIKLNKKISPEVIGITSQIEGFS 180 Query: 181 KLADVIAANLSIKVAERQKILEAVSVKERLEMLLVFMESEISVLQVEKRIRSRVKRQMEK 240 KLADVIAANLSIKVAERQKILEAVSVKERLEMLLVFMESEISVLQVEKRIRSRVKRQMEK Sbjct: 181 KLADVIAANLSIKVAERQKILEAVSVKERLEMLLVFMESEISVLQVEKRIRSRVKRQMEK 240 Query: 241 TQREYYLHEQMKAIQKELDNGEEGRDEISDFEARISKIRLSKEAREKALSELQKLRQMNP 300 TQREYYLHEQMKAIQKELDNGEEGRDEISDFEARISKIRLSKEAREKALSELQKLRQMNP Sbjct: 241 TQREYYLHEQMKAIQKELDNGEEGRDEISDFEARISKIRLSKEAREKALSELQKLRQMNP 300 Query: 301 LSAESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMR 360 LSAESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMR Sbjct: 301 LSAESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMR 360 Query: 361 VIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMP 420 VIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMP Sbjct: 361 VIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMP 420 Query: 421 GRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDL 480 GRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDL Sbjct: 421 GRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDL 480 Query: 481 SDVMFIMTANTLNIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCI 540 SDVMFIMTANTLNIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCI Sbjct: 481 SDVMFIMTANTLNIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCI 540 Query: 541 SDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVPRY 600 SDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVPRY Sbjct: 541 SDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVPRY 600 Query: 601 KYGKIEGEDQVGIVTGLAWTEVGGEILTVEGVIMPGKGEITITGNLKEIMKESILAASSY 660 KYGKIEGEDQVGIVTGLAWTEVGGEILTVEGVIMPGKGEITITGNLKEIMKESILAASSY Sbjct: 601 KYGKIEGEDQVGIVTGLAWTEVGGEILTVEGVIMPGKGEITITGNLKEIMKESILAASSY 660 Query: 661 VRSKATTFGIIPSAFNEINIHVHVPEGATPKDGPSAGIAMATAIVSIMTCIPVYKNVAMT 720 VRSKATTFGIIPSAFNEINIHVHVPEGATPKDGPSAGIAMATAIVSIMTCIPVYKNVAMT Sbjct: 661 VRSKATTFGIIPSAFNEINIHVHVPEGATPKDGPSAGIAMATAIVSIMTCIPVYKNVAMT 720 Query: 721 GELTLRGRVLPIGGLKEKLLAALRAGVTKVLIPEENIKDLMDIPENVKNGLEIIPVSFMG 780 GELTLRGRVLPIGGLKEKLLAALRAGVTKVLIPEENIKDLMDIPENVKNGLEIIPVSFMG Sbjct: 721 GELTLRGRVLPIGGLKEKLLAALRAGVTKVLIPEENIKDLMDIPENVKNGLEIIPVSFMG 780 Query: 781 EVLKHALLRMPDPLESEGNKSIPLSVEGIVVGKDGRSVAH 820 EVLKHALLRMPDPLESEGNKSIPLSVEGIVVGKDGRSVAH Sbjct: 781 EVLKHALLRMPDPLESEGNKSIPLSVEGIVVGKDGRSVAH 820 >gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus Liberibacter asiaticus str. psy62] Length = 853 Score = 40.8 bits (94), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 21/131 (16%) Query: 369 LCFVGPPGVGKTSLAQSIAK---ATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQ 425 F+GP GVGKT L +S+A+ +R+ + ++ + IGS PG + Sbjct: 601 FMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSV----SRLIGSPPGYVGY 656 Query: 426 ----SLKRAKRSNP--LLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYD 479 +L A R +P ++L DEI+K SD+ LL+VLD + + + D Sbjct: 657 EEGGALTEAVRRHPYQVVLFDEIEKAHSDVHN----ILLQVLDDGRLTDSQGRTV----D 708 Query: 480 LSDVMFIMTAN 490 + + IMT+N Sbjct: 709 FRNTLIIMTSN 719 Score = 26.9 bits (58), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 15/82 (18%) Query: 371 FVGPPGVGKTSLAQSIAKA----------TGRQYVRMSLGGVYDEADIRGHRRTYIGSMP 420 +G PGVGKT++ + +A G++ + + +G + A RG + S+ Sbjct: 204 LIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLL 263 Query: 421 GRIIQSLKRAKRSNPLLLLDEI 442 I R++ +L +DE+ Sbjct: 264 CEI-----RSEDGEIILFIDEL 280 >gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62] Length = 647 Score = 40.4 bits (93), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 16/115 (13%) Query: 339 QDHFGLEKVKE---RIIEYLAVQMRVIKNKGLI---LCFVGPPGVGKTSLAQSIAKATGR 392 +D G+++ KE I+++L + + G I + VGPPG GKT LA+++A Sbjct: 148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANV 207 Query: 393 QYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNP-LLLLDEIDKMG 446 + +S G + E ++G R+ ++AK ++P ++ +DEID +G Sbjct: 208 PFFTIS-GSDFVE--------LFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVG 253 >gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter asiaticus str. psy62] Length = 334 Score = 38.5 bits (88), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 80/182 (43%), Gaps = 40/182 (21%) Query: 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLK 428 + FVGPPG+GKT+LAQ +A+ G + R + G V +A G + ++ R + Sbjct: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDRDV---- 108 Query: 429 RAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYL-------EVEYDLS 481 L +DEI ++ S + E+L PA +D + V+ +LS Sbjct: 109 --------LFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 Query: 482 DVMFIMTANTLNIPL---PLMDRMEI-IRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEE 537 F + A T + L PL DR I IR+ Y E E L+ K LT A+ E Sbjct: 153 --RFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDLKTIVQRGAK--LTGLAVTDEA 207 Query: 538 CC 539 C Sbjct: 208 AC 209 >gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 798 Score = 38.1 bits (87), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 14/102 (13%) Query: 368 ILCFV--GPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIR---GHRRTYIGSMPGR 422 I C+V GP GVGKT +++ +A A G Q +R + + + G Y+G G Sbjct: 507 IGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGG 566 Query: 423 IIQSLKRAKRSNP--LLLLDEIDKMGSDLRGDPSAALLEVLD 462 I L + NP ++LLDEI+K D+ LL+++D Sbjct: 567 I---LADSVDQNPYSVVLLDEIEKSHPDVLN----ILLQIMD 601 Score = 36.6 bits (83), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 75/174 (43%), Gaps = 29/174 (16%) Query: 317 GVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILC------ 370 G D ++KT NL A+ D EKVK+ ++ L + I ILC Sbjct: 170 GFVNDYQAKTDLNLFPALSAYCVDL--TEKVKKGKVDILVGRHEEINRTIQILCRRSKNN 227 Query: 371 --FVGPPGVGKTSLAQSIAKAT----------GRQYVRMSLGGVYDEADIRGHRRTYIGS 418 +VG PGVGKT++A+ AK G + + +G + I G R Y G Sbjct: 228 PLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNL-----IAGTR--YRGD 280 Query: 419 MPGRIIQSLKRAKR-SNPLLLLDEIDKM-GSDLRGDPSAALLEVLDPAQNSSFV 470 RI + +K + +N +L +DEI + G+ S +L PA +S V Sbjct: 281 FEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAV 334 >gi|254780334|ref|YP_003064747.1| DNA repair protein RadA [Candidatus Liberibacter asiaticus str. psy62] Length = 479 Score = 32.7 bits (73), Expect = 0.023, Method: Compositional matrix adjust. Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Query: 675 FNEINIHVHVPEGATPKDGPSAGIAMATAIVSIMTCIPVYKNVAMTGELTLRGRVLPIGG 734 F ++H+++ G + P+A +A+A A++S + IP+ + GE++L G V +G Sbjct: 353 FGNHDVHLNIAGGYRISE-PAADVAVAAALISSILSIPLPSDFVYFGEVSLSGSVRAVGH 411 Query: 735 LKEKLLAALRAGVTKVLIPE 754 ++++L A + G + PE Sbjct: 412 MQQRLKEAEKIGFLSGVFPE 431 >gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 437 Score = 31.2 bits (69), Expect = 0.077, Method: Compositional matrix adjust. Identities = 10/29 (34%), Positives = 21/29 (72%) Query: 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRM 397 + VGP GVGKT++++ +A+ G ++++ Sbjct: 56 ILLVGPTGVGKTAISRRLARLAGAPFIKV 84 >gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid protein [Candidatus Liberibacter asiaticus str. psy62] Length = 803 Score = 30.4 bits (67), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%) Query: 725 LRGRVLPIGGLKEKLLAALRAGVTKVLIPEENIKDLMDIPENVKNGLEIIPVSFMG 780 L+ RVLPI KEKLL A R +T + ++ + +N + L+ PV FM Sbjct: 122 LKARVLPISLHKEKLLYAWR--ITDITSERKDQEKFFRELQNAIDYLDHSPVGFMS 175 >gi|254780619|ref|YP_003065032.1| primosome assembly protein PriA [Candidatus Liberibacter asiaticus str. psy62] Length = 731 Score = 30.0 bits (66), Expect = 0.16, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 25/93 (26%) Query: 342 FGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQS-IAK------------ 388 FG+E++ E + EY + I + L G G+ L S IAK Sbjct: 493 FGIERIAEEVCEYFPLARISILSSDL------EGGGGRLQLQLSAIAKGEIDIIIGTQLV 546 Query: 389 ATGRQYVRMSLGGVYD------EADIRGHRRTY 415 A G + RMSL GV D AD+R RT+ Sbjct: 547 AKGHNFPRMSLVGVVDGDLGLTNADLRSSERTF 579 >gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 29.6 bits (65), Expect = 0.18, Method: Compositional matrix adjust. Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 9/94 (9%) Query: 317 GVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPG 376 P + K+ K N I+ L++ + +++ + + V++ + +I+ GP G Sbjct: 3 NTPINSKNPPKNNFAVEIKFLNKWYGNFHALRD-------INLNVLRGERVII--AGPSG 53 Query: 377 VGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRG 410 GK++L + I Q + + G+ DIR Sbjct: 54 SGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRN 87 >gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Liberibacter asiaticus str. psy62] Length = 424 Score = 29.6 bits (65), Expect = 0.19, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 14/81 (17%) Query: 371 FVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRA 430 VGP G GKT LAQ++A+ + M+ EA Y+G II L +A Sbjct: 118 LVGPTGCGKTYLAQTLARIIDVPFT-MADATTLTEA-------GYVGEDVENIILKLLQA 169 Query: 431 KRSN------PLLLLDEIDKM 445 N ++ +DE+DK+ Sbjct: 170 ADYNVERAQRGIVYIDEVDKI 190 >gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str. psy62] Length = 504 Score = 29.6 bits (65), Expect = 0.20, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Query: 352 IEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQY 394 I+ L QM ++ LI+ G PG+GKTSLA +IA Y Sbjct: 206 IQTLDKQMGGLQRSDLIII-AGRPGMGKTSLATNIAYNVADAY 247 >gi|255764507|ref|YP_003065323.2| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 222 Score = 27.7 bits (60), Expect = 0.74, Method: Compositional matrix adjust. Identities = 9/29 (31%), Positives = 19/29 (65%) Query: 361 VIKNKGLILCFVGPPGVGKTSLAQSIAKA 389 + ++G++L P GVGK+++A+ + K Sbjct: 10 TVNHRGMMLIISSPSGVGKSTIARHLLKC 38 >gi|254780766|ref|YP_003065179.1| recombination protein F [Candidatus Liberibacter asiaticus str. psy62] Length = 375 Score = 27.3 bits (59), Expect = 1.1, Method: Compositional matrix adjust. Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%) Query: 371 FVGPPGVGKTSLAQSIAKAT-GRQYVRMSLGGV 402 FVG GVGKT++ ++I+ + GR + R S V Sbjct: 32 FVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 >gi|254780487|ref|YP_003064900.1| dithiobiotin synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 217 Score = 27.3 bits (59), Expect = 1.1, Method: Compositional matrix adjust. Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Query: 377 VGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMP 420 VGKT A ++ A Y + G+Y+E D + R IG +P Sbjct: 14 VGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHR--IGRIP 55 >gi|254781083|ref|YP_003065496.1| hypothetical protein CLIBASIA_04925 [Candidatus Liberibacter asiaticus str. psy62] Length = 160 Score = 26.2 bits (56), Expect = 2.4, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 55/149 (36%), Gaps = 43/149 (28%) Query: 33 LRDIVVFPYMIVPLFVGREKSVRALDEAMNSHKKIILVTQMNSNDENPIASSVYRIGTIV 92 L + + + V FV R KS + EA+ +KK+ V + + N +SSV R Sbjct: 11 LVQVSILVFCFVSHFVQR-KSFADVHEALERYKKVARVVGPHIPNSNVFSSSVRR----- 64 Query: 93 DIVQILRLPDGTVKILVEGSVRARIVEYIEREDFLEAITQVLPDPTEDPV---------E 143 + ER D + A+ Q L D V + Sbjct: 65 -------------------------TYWSERGDIINALDQDLQDVESIEVFEYLKTRLSD 99 Query: 144 LEALSRSVIAEFSNYIKLNKKISPEVIGI 172 LEA RS+ F+ Y KK+ P VI + Sbjct: 100 LEAHRRSMSFYFAKY---PKKVGPSVIDV 125 >gi|254780480|ref|YP_003064893.1| 2'-deoxycytidine 5'-triphosphate deaminase [Candidatus Liberibacter asiaticus str. psy62] Length = 367 Score = 25.4 bits (54), Expect = 3.5, Method: Compositional matrix adjust. Identities = 11/29 (37%), Positives = 19/29 (65%) Query: 273 ARISKIRLSKEAREKALSELQKLRQMNPL 301 +R+S+IR KE + + EL L +++PL Sbjct: 154 SRLSQIRFVKERKFCSQEELSALHELSPL 182 >gi|254780810|ref|YP_003065223.1| transcription termination factor Rho [Candidatus Liberibacter asiaticus str. psy62] Length = 423 Score = 25.0 bits (53), Expect = 4.8, Method: Compositional matrix adjust. Identities = 12/30 (40%), Positives = 16/30 (53%) Query: 365 KGLILCFVGPPGVGKTSLAQSIAKATGRQY 394 KG V PP GKT L Q+IA + + + Sbjct: 173 KGQRSLIVAPPRTGKTILLQNIAHSIKKNH 202 >gi|254780419|ref|YP_003064832.1| aspartyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 622 Score = 25.0 bits (53), Expect = 5.4, Method: Compositional matrix adjust. Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 3/150 (2%) Query: 314 WLLGVPWDKKSKTKKNLDFAIRILDQDHFGLEKVK-ERIIEYLAVQMRVIKNKGLILCFV 372 W++ P+ + ++ +K +DFA G+E +K ++ A Q ++ N G + Sbjct: 436 WIMDFPFYEWNEEEKKIDFAHNPFTMPQGGMESLKGNDLLSIKAFQYDLVCN-GFEIASG 494 Query: 373 GPPGVGKTSLAQSIAK-ATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAK 431 G + Q+ + ++ V GG+Y I + RI+ L AK Sbjct: 495 GIRNHMSEVMLQAFSNVGISKEVVENRFGGLYRAFQCGMPPHGGIAAGIDRIVMLLLGAK 554 Query: 432 RSNPLLLLDEIDKMGSDLRGDPSAALLEVL 461 + L L G PS +E L Sbjct: 555 NVREVSLFPMSQNFCDLLMGSPSTVSVEQL 584 >gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter asiaticus str. psy62] Length = 1775 Score = 24.6 bits (52), Expect = 7.2, Method: Compositional matrix adjust. Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%) Query: 361 VIKNKGLILCFVGPPGVGKTSLAQSIAKAT 390 VI K LI+ GPPG GK+ +I A Sbjct: 416 VINGKNLII--EGPPGTGKSQTITNIIAAA 443 >gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 348 Score = 24.3 bits (51), Expect = 9.4, Method: Compositional matrix adjust. Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%) Query: 346 KVKERIIEYLAVQMRVIKN----KGLILCFVGPPGVGKTSLAQSI 386 K +++ EY V + N KG IL +G G GK++L +SI Sbjct: 31 KKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSI 75 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.317 0.136 0.374 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 503,553 Number of Sequences: 1233 Number of extensions: 21152 Number of successful extensions: 106 Number of sequences better than 100.0: 26 Number of HSP's better than 100.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 86 Number of HSP's gapped (non-prelim): 30 length of query: 820 length of database: 328,796 effective HSP length: 82 effective length of query: 738 effective length of database: 227,690 effective search space: 168035220 effective search space used: 168035220 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 42 (20.8 bits)