HHsearch alignment for GI: 254780271 and conserved domain: CHL00095
>CHL00095 clpC Clp protease ATP binding subunit.
Probab=98.60 E-value=7.4e-07 Score=68.57 Aligned_cols=98 Identities=30% Similarity=0.425 Sum_probs=63.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHH---CCC-------EEEHHHHHH-HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 56835884073321769999999871---853-------131012211-1111035563303577887654227765422
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARII---DVP-------FTMADATTL-TEAGYVGEDVENIILKLLQAADYNVERAQRG 180 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l---~~P-------F~~vdaT~~-TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~ 180 (424)
T Consensus 199 ~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDl~~L~AGtkyRGe-FEeRlk~il~e----i~~~~~i 273 (823)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLVLTLDIGLLLAGTKYRGE-FEERIKKIMDE----IKKANNI 273 (823)
T ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHHHHHCCCCCHH-HHHHHHHHHHH----HHHCCCE
T ss_conf 248850237999879999999999760889986875993688428877533422267-99999999999----9857986
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE
Q ss_conf 3332233320023333334432102568988753105870
Q gi|254780271|r 181 IVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTI 220 (424)
Q Consensus 181 iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~ 220 (424)
T Consensus 274 ILFIDEiHtlvGaG~~-~-----g~~DaaNlLKPaLarGe 307 (823)
T CHL00095 274 ILVIDEIHTLIGAGAA-E-----GAIDAANILKPALARGK 307 (823)
T ss_pred EEEECCHHHHCCCCCC-C-----CCHHHHHHHHHHHHCCC
T ss_conf 9997351653288976-6-----64317887657864898