HHsearch alignment for GI: 254780271 and conserved domain: CHL00178

Probab=96.05  E-value=0.0059  Score=41.26  Aligned_cols=67  Identities=24%  Similarity=0.297  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCC-------------CCCCC-CCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHH
Q ss_conf             9999999999865887521210-------------13552-256835884073321769999999871853131012211
Q gi|254780271|r   84 QAKKVLAVAVHNHYKRLAHSSK-------------SSNVE-LAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTL  149 (424)
Q Consensus        84 ~AKkavAvAv~nh~rR~~~~~~-------------~~~~e-i~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~  149 (424)
T Consensus      1415 LAErrIFLA~yQtIT~Sq~~c~~n~~~~ps~gkPfsLrL~lspSkGILlIGsigTGRSYLVKsLAanSYvPlI~I~lnK~ 1494 (2133)
T CHL00178       1415 LAERRIFLAHYQTITYSQTSCGANSFHFPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKF 1494 (2133)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEECHHHH
T ss_conf             88899999998787603655566655787789860110277766763797877666689998876425375189507887


Q ss_pred             H
Q ss_conf             1
Q gi|254780271|r  150 T  150 (424)
Q Consensus       150 T  150 (424)
T Consensus      1495 L 1495 (2133)
T CHL00178       1495 L 1495 (2133)
T ss_pred             H
T ss_conf             3