HHsearch alignment for GI: 254780271 and conserved domain: CHL00179

Probab=96.25  E-value=0.0046  Score=42.02  Aligned_cols=75  Identities=21%  Similarity=0.311  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHHHHHHCC-------------CCCCCCCC-CCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHH
Q ss_conf             99999999998658875212-------------10135522-56835884073321769999999871853131012211
Q gi|254780271|r   84 QAKKVLAVAVHNHYKRLAHS-------------SKSSNVEL-AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTL  149 (424)
Q Consensus        84 ~AKkavAvAv~nh~rR~~~~-------------~~~~~~ei-~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~  149 (424)
T Consensus      1557 LAErrIFLA~yQtIt~Sq~~~~~n~~~fps~gkPfsL~L~lspSkGILvIGsigTGRSYLVK~LAanSYvPlI~I~lnK~ 1636 (2262)
T CHL00179       1557 LAERRIFLAHYQTITYSQTPCGANSSHFPSHGKPFSLRLALPPSRGILVIGFIGTGRSYFVKYRVTNSYVPFITVFPNKF 1636 (2262)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEHHHH
T ss_conf             88899999998788606654576766686689873100277876762797877666689998876425375189517776


Q ss_pred             --HHHHHCCCC
Q ss_conf             --111103556
Q gi|254780271|r  150 --TEAGYVGED  158 (424)
Q Consensus       150 --TE~GYvG~D  158 (424)
T Consensus      1637 L~~~~~~~~~~ 1647 (2262)
T CHL00179       1637 LDDNKGYLIDD 1647 (2262)
T ss_pred             HCCCCCCCCCC
T ss_conf             33586544564