HHsearch alignment for GI: 254780271 and conserved domain: CHL00181
>CHL00181 cbbX CbbX; Provisional.
Probab=99.59 E-value=2.2e-13 Score=114.23 Aligned_cols=232 Identities=20% Similarity=0.313 Sum_probs=154.5
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHH----HHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHC---
Q ss_conf 9878999997420308599999999----999865887521210135522568358840733217699999998718---
Q gi|254780271|r 66 PNPQEILRVLDEYVIGQGQAKKVLA----VAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIID--- 138 (424)
Q Consensus 66 ~tP~eI~~~Ld~yVIGQ~~AKkavA----vAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~--- 138 (424)
T Consensus 12 ~~lee~L~eLd~eliGL~~VK~~v~~l~~~~~~~~~R~-~~Gl~~~~---~s~h~vF~GnPGTGKTTVARl~a~il~~lG 87 (287)
T CHL00181 12 TQIQEVLDELDEELIGLVPVKTRIREIAALLLVDRLRK-NLGLVSSS---PGLHMSFTGSPGTGKTTVALKMADILYRLG 87 (287)
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCC---CCCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 34999999998864696999999999999999999999-87999888---765388878998679999999999999869
Q ss_pred ----CCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf ----5313101221111110355633035778876542277654223332233320023333334432102568988753
Q gi|254780271|r 139 ----VPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLK 214 (424)
Q Consensus 139 ----~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLk 214 (424)
T Consensus 88 ~L~~g~vve~~r~dLv-g~yvG~Ta----~k----t~~~i~~a~GGVLfIDEAY~L~~~~----~~~d-fg~eaidtLl~ 153 (287)
T CHL00181 88 YIKKGHLITVTRDDLV-GQYIGHTA----PK----TKEVLKKAMGGVLFIDEAYYLYKPD----NERD-YGAEAIEILLQ 153 (287)
T ss_pred CCCCCEEEEECHHHHC-CCCCCCCH----HH----HHHHHHHCCCCEEEEECHHHHCCCC----CCCC-CHHHHHHHHHH
T ss_conf 9558958995358841-63535216----99----9999996459879982446535788----9998-37999999999
Q ss_pred HCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 10587010256556432224302431000123220004678988764123433321111000000016899964105677
Q gi|254780271|r 215 IMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDL 294 (424)
Q Consensus 215 ileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL 294 (424)
T Consensus 154 ~me~~~---------------------~~lvvI~AGY~~eM~---------------------------~fl~~------ 179 (287)
T CHL00181 154 VMENQR---------------------DDLVVIFAGYKDRMD---------------------------KFYES------ 179 (287)
T ss_pred HHHHCC---------------------CCEEEEEECCHHHHH---------------------------HHHHH------
T ss_conf 987079---------------------988999846789999---------------------------99985------
Q ss_pred HHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHH----HCCCC-CH
Q ss_conf 75220689872078426721110578999987426779999999987449899996899999999551----06787-42
Q gi|254780271|r 295 VKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAI----AHKTG-AR 369 (424)
Q Consensus 295 ~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~----~~niG-AR 369 (424)
T Consensus 180 -----NpGL~sRf~~~i~F~dYt~~EL~~I~~----~~~~-------~~--~~~l~~~a~~~l~~~~~~~~~~~~FGNaR 241 (287)
T CHL00181 180 -----NPGLSSRVANHVDFPDYTPEELLQIAK----MMLE-------EQ--QYQLTPEAEKVLLDYIKRRMEQPLFANAR 241 (287)
T ss_pred -----CCCHHHHCCCEEECCCCCHHHHHHHHH----HHHH-------HC--CCCCCHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf -----904787688723779859999999999----9999-------86--98258799999999999850899987489
Q ss_pred HHHHHHHHHHHHHHHCCC
Q ss_conf 368999999677740276
Q gi|254780271|r 370 GLRSILEKILLDTMFELP 387 (424)
Q Consensus 370 ~LrtIiE~iLedimFe~P 387 (424)
T Consensus 242 ~vrnl~e~a~~~qa~Rl~ 259 (287)
T CHL00181 242 SVRNAIDRARMRQANRIF 259 (287)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999998865