HHsearch alignment for GI: 254780271 and conserved domain: COG0466

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].
Probab=99.60  E-value=8.1e-14  Score=117.31  Aligned_cols=266  Identities=22%  Similarity=0.319  Sum_probs=181.6

Q ss_pred             CHHHHHHHHHHHCCCHHHHHHHHH--HHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEH
Q ss_conf             878999997420308599999999--999865887521210135522568358840733217699999998718531310
Q gi|254780271|r   67 NPQEILRVLDEYVIGQGQAKKVLA--VAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMA  144 (424)
Q Consensus        67 tP~eI~~~Ld~yVIGQ~~AKkavA--vAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~v  144 (424)
T Consensus       313 Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~-------~~~kGp----ILcLVGPPGVGKTSLgkSIA~al~RkfvR~  381 (782)
T COG0466         313 DLKKAEKILDKDHYGLEKVKERILEYLAVQKLT-------KKLKGP----ILCLVGPPGVGKTSLGKSIAKALGRKFVRI  381 (782)
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH-------CCCCCC----EEEEECCCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf             299999874435567116899999999999861-------467885----799978998870118999999958977999


Q ss_pred             HHHHHH-HH-------HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             122111-11-------1035563303577887654227765422333223332002333333443210256898875310
Q gi|254780271|r  145 DATTLT-EA-------GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIM  216 (424)
Q Consensus       145 daT~~T-E~-------GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkil  216 (424)
T Consensus       382 sLGGvrDEAEIRGHRRTYIGaMPGrIiQ~mkka~~------~NPv~LLDEIDKm~ss~-----rGDPa-----SALLEVL  445 (782)
T COG0466         382 SLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGV------KNPVFLLDEIDKMGSSF-----RGDPA-----SALLEVL  445 (782)
T ss_pred             ECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCC------CCCEEEEECHHHCCCCC-----CCCHH-----HHHHHHC
T ss_conf             54765427775355312335687289999998677------68747864033316777-----78868-----8888626


Q ss_pred             CCCEEECCCCCCCCCCCC-C--EEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             587010256556432224-3--0243100012322000467898876412343332111100000001689996410567
Q gi|254780271|r  217 EGTIASVPPQGGRKHPQQ-E--FLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESED  293 (424)
Q Consensus       217 eg~~~~v~~~~grk~~~~-~--~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D  293 (424)
T Consensus       446 DPEQN~---------~F~DhYLev~yDLS~VmFiaTANsl------------------------~t--------------  478 (782)
T COG0466         446 DPEQNN---------TFSDHYLEVPYDLSKVMFIATANSL------------------------DT--------------  478 (782)
T ss_pred             CHHHCC---------CHHHCCCCCCCCHHHEEEEEECCCC------------------------CC--------------
T ss_conf             976567---------6122201676644325888603751------------------------32--------------


Q ss_pred             HHHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             77522068987207842672111057899998742677999999998744989999689999999955106787423689
Q gi|254780271|r  294 LVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRS  373 (424)
Q Consensus       294 L~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~Lrt  373 (424)
T Consensus       479 -----IP~PLlDRME-iI~lsgYt~~EKl~IA---k~~LiPk~~~~~gL~~~el~i~d~ai~~iI~-~YTREAGVR~LeR  548 (782)
T COG0466         479 -----IPAPLLDRME-VIRLSGYTEDEKLEIA---KRHLIPKQLKEHGLKKGELTITDEAIKDIIR-YYTREAGVRNLER  548 (782)
T ss_pred             -----CCHHHHCCEE-EEEECCCCHHHHHHHH---HHHCCHHHHHHCCCCCCCEEECHHHHHHHHH-HHHHHHHHHHHHH
T ss_conf             -----9867843030-5642688869999999---9844568999759982335565899999999-8767621038999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCE-EEECHHHHCCCCCEEEEECCCCH
Q ss_conf             999996777402767898419-99837785587881687256511
Q gi|254780271|r  374 ILEKILLDTMFELPMLKGVSS-VIISDDVVKGKACPLNVYTDRRD  417 (424)
Q Consensus       374 IiE~iLedimFe~P~~~~~~~-v~Id~~~V~~~~~p~~~~~~~~~  417 (424)
T Consensus       549 ~i~ki~RK~~~~i~~~~-~k~~~~i~~~~l~~yLG~~~f~~~~~~  592 (782)
T COG0466         549 EIAKICRKAAKKILLKK-EKSIVKIDEKNLKKYLGVPVFRYGKAE  592 (782)
T ss_pred             HHHHHHHHHHHHHHHCC-CCCCEEECHHHHHHHHCCCCCCCCCCC
T ss_conf             99999999999997257-566244278899997398634753112