HHsearch alignment for GI: 254780271 and conserved domain: COG1219
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones].
Probab=100.00 E-value=0 Score=1055.04 Aligned_cols=402 Identities=71% Similarity=1.116 Sum_probs=388.3
Q ss_pred CCCCCCHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHHHHC-CHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 68988865742211389913431799999999898742100-00002699878999997420308599999999999865
Q gi|254780271|r 18 SFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSI-TKSHEGIPNPQEILRVLDEYVIGQGQAKKVLAVAVHNH 96 (424)
Q Consensus 18 sfCg~~~~~v~~li~g~~~~iC~~Ci~~~~~i~~~e~~~~~-~~~~~~~~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh 96 (424)
T Consensus 1 SFCgksq~~v~kliagp~v~ICdeCielc~~ii~ee~~~~~~~~~~~~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNH 80 (408)
T COG1219 1 SFCGKSQHEVRKLIAGPGVYICDECIELCNDIIREELKEALDEKELSELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNH 80 (408)
T ss_pred CCCCCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHEECCHHHHCEEEEEEEHH
T ss_conf 98775578999885089856659999999999998653100101221599869999986524326254310346641068
Q ss_pred HHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 88752121013552256835884073321769999999871853131012211111103556330357788765422776
Q gi|254780271|r 97 YKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVER 176 (424)
Q Consensus 97 ~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~ 176 (424)
T Consensus 81 YKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~r 160 (408)
T COG1219 81 YKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVER 160 (408)
T ss_pred HHHHHCCCCCCCEEEEECCEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCHHHCCCCCHHHHHHHHHHHHHCCCCHHH
T ss_conf 89986048877635320317998889975779999999984898475144412106635500899999999876458888
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHH
Q ss_conf 54223332233320023333334432102568988753105870102565564322243024310001232200046789
Q gi|254780271|r 177 AQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLD 256 (424)
Q Consensus 177 a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~ 256 (424)
T Consensus 161 AerGIIyIDEIDKIarkSen~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~Gle 240 (408)
T COG1219 161 AERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLE 240 (408)
T ss_pred HHCCEEEEECHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHH
T ss_conf 82885998510254205789872343673589999999970751023999888798420488737634678244010399
Q ss_pred HHHHHHCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 887641234333211110000-0001689996410567775220689872078426721110578999987426779999
Q gi|254780271|r 257 RIISARGEKASIGFSAVVKDS-DNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQ 335 (424)
Q Consensus 257 ~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQ 335 (424)
T Consensus 241 kiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQ 320 (408)
T COG1219 241 KIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQ 320 (408)
T ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCHHHHCCCCEEEEHHHCCHHHHHHHHHCCCHHHHHH
T ss_conf 99998626874245664453444412889987548687887088388726663264610159999999972651789999
Q ss_pred HHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHCCCCCEEEEECCC
Q ss_conf 99998744989999689999999955106787423689999996777402767898419998377855878816872565
Q gi|254780271|r 336 YQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKILLDTMFELPMLKGVSSVIISDDVVKGKACPLNVYTDR 415 (424)
Q Consensus 336 y~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLedimFe~P~~~~~~~v~Id~~~V~~~~~p~~~~~~~ 415 (424)
T Consensus 321 Yq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~lld~MfelPs~~~v~~v~I~~~~v~~~~~p~l~~~~~ 400 (408)
T COG1219 321 YQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIEELLLDVMFELPSLEDVEKVVITEEVVDGNAEPLLIYASP 400 (408)
T ss_pred HHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHCCCCCCEEEECCC
T ss_conf 99996446916997489999999999984335357999999999998852788678508997688847888872762243
Q ss_pred CHHH
Q ss_conf 1145
Q gi|254780271|r 416 RDEK 419 (424)
Q Consensus 416 ~~~~ 419 (424)
T Consensus 401 ~~~~ 404 (408)
T COG1219 401 SKEK 404 (408)
T ss_pred CCCC
T ss_conf 3424