HHsearch alignment for GI: 254780271 and conserved domain: COG1220

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones].
Probab=100.00  E-value=0  Score=753.94  Aligned_cols=297  Identities=43%  Similarity=0.680  Sum_probs=269.1

Q ss_pred             CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEH
Q ss_conf             99878999997420308599999999999865887521210135522568358840733217699999998718531310
Q gi|254780271|r   65 IPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMA  144 (424)
Q Consensus        65 ~~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~v  144 (424)
T Consensus         3 ~~tPreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~q-L~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKV   81 (444)
T COG1220           3 EMTPREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQ-LEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKV   81 (444)
T ss_pred             CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-CCHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf             8887999999876740717778899999998999975-478776225755358888888768899999999848983788


Q ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH------------------------------------------------
Q ss_conf             12211111103556330357788765422776------------------------------------------------
Q gi|254780271|r  145 DATTLTEAGYVGEDVENIILKLLQAADYNVER------------------------------------------------  176 (424)
Q Consensus       145 daT~~TE~GYvG~Dvesii~~L~~~a~~~v~~------------------------------------------------  176 (424)
T Consensus        82 EATKfTEVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~rk  161 (444)
T COG1220          82 EATKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRK  161 (444)
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             76421340325645899999999999999999999999999999999999998669875546667300002679999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|254780271|r  177 --------------------------------------------------------------------------------  176 (424)
Q Consensus       177 --------------------------------------------------------------------------------  176 (424)
                                                                                                      
T Consensus       162 kLr~GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i~  241 (444)
T COG1220         162 KLREGELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIK  241 (444)
T ss_pred             HHHCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf             99758877617999972267875346899857899999999998646887303665699999987777887626999999


Q ss_pred             -------HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHH
Q ss_conf             -------5422333223332002333333443210256898875310587010256556432224302431000123220
Q gi|254780271|r  177 -------AQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICG  249 (424)
Q Consensus       177 -------a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~  249 (424)
T Consensus       242 ~eAi~~aE~~GIvFIDEIDKIa~~~~--~g~~dvSREGVQRDlLPlvEGstV~T-----------KyG~VkTdHILFIas  308 (444)
T COG1220         242 QEAIDAAEQNGIVFIDEIDKIAKRGG--SGGPDVSREGVQRDLLPLVEGSTVST-----------KYGPVKTDHILFIAS  308 (444)
T ss_pred             HHHHHHHHHCCEEEEEHHHHHHHCCC--CCCCCCCHHHHCCCCCCCCCCCEEEC-----------CCCCCCCCEEEEEEC
T ss_conf             99999988569089734667874378--89988664320102103105754431-----------544401443788714


Q ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf             00467898876412343332111100000001689996410567775220689872078426721110578999987426
Q gi|254780271|r  250 GAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPK  329 (424)
Q Consensus       250 gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepk  329 (424)
T Consensus       309 GAFh----------------------------------~s-----KPSDLiPELQGRfPIRVEL~~Lt~~Df~rILtep~  349 (444)
T COG1220         309 GAFH----------------------------------VA-----KPSDLIPELQGRFPIRVELDALTKEDFERILTEPK  349 (444)
T ss_pred             CCEE----------------------------------CC-----CHHHCCHHHCCCCCEEEECCCCCHHHHHHHHCCCH
T ss_conf             8200----------------------------------37-----81321766627773488704489989999963760


Q ss_pred             HHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHCC
Q ss_conf             7799999999874498999968999999995510-----67874236899999967774027678984199983778558
Q gi|254780271|r  330 NALIKQYQCLFDMEDVELVFHEDALREIARCAIA-----HKTGARGLRSILEKILLDTMFELPMLKGVSSVIISDDVVKG  404 (424)
Q Consensus       330 nsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~-----~niGAR~LrtIiE~iLedimFe~P~~~~~~~v~Id~~~V~~  404 (424)
T Consensus       350 ~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlLediSFeA~d~~g-~~v~Id~~yV~~  428 (444)
T COG1220         350 ASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLLEDISFEAPDMSG-QKVTIDAEYVEE  428 (444)
T ss_pred             HHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC-CEEEECHHHHHH
T ss_conf             7899999999731583488537999999999998554300011788999999999870705877899-758975899999


Q ss_pred             CCCEEEEECCC
Q ss_conf             78816872565
Q gi|254780271|r  405 KACPLNVYTDR  415 (424)
Q Consensus       405 ~~~p~~~~~~~  415 (424)
T Consensus       429 ~l~~l~~n~DL  439 (444)
T COG1220         429 KLGDLVANEDL  439 (444)
T ss_pred             HHHHHHCCCCH
T ss_conf             99877517415