HHsearch alignment for GI: 254780271 and conserved domain: COG1221
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].
Probab=98.84 E-value=3.7e-08 Score=77.68 Aligned_cols=223 Identities=19% Similarity=0.277 Sum_probs=141.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH----HCCCEEEH
Q ss_conf 89999974203085999999999998658875212101355225683588407332176999999987----18531310
Q gi|254780271|r 69 QEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARI----IDVPFTMA 144 (424)
Q Consensus 69 ~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~----l~~PF~~v 144 (424)
T Consensus 70 ~~~~~~~~~~LIG~~~~~~~~----~eqik~~----a-----p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~ 136 (403)
T COG1221 70 PYLKSEALDDLIGESPSLQEL----REQIKAY----A-----PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAF 136 (403)
T ss_pred HHCCCHHHHHHHCCCHHHHHH----HHHHHHH----C-----CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 210221566663568889999----9999861----8-----99984798668875388999999986121358987997
Q ss_pred HHHHHHHHH------------HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 122111111------------03556330357788765422776542233322333200233333344321025689887
Q gi|254780271|r 145 DATTLTEAG------------YVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQAL 212 (424)
Q Consensus 145 daT~~TE~G------------YvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~L 212 (424)
T Consensus 137 NCa~~~en~~~~eLFG~~kGaftGa~~---------~k~Glfe~A~GGtLfLDEI~~LP~~--------------~Q~kL 193 (403)
T COG1221 137 NCAAYSENLQEAELFGHEKGAFTGAQG---------GKAGLFEQANGGTLFLDEIHRLPPE--------------GQEKL 193 (403)
T ss_pred EHHHHCCCHHHHHHHCCCCCEEECCCC---------CCCCHHEECCCCEEEHHHHHHCCHH--------------HHHHH
T ss_conf 777737677777773200000025667---------8676420527977765636537985--------------89999
Q ss_pred HHHCCCCEEE-CCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 5310587010-256556432224302431000123220004678988764123433321111000000016899964105
Q gi|254780271|r 213 LKIMEGTIAS-VPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLES 291 (424)
Q Consensus 213 Lkileg~~~~-v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (424)
T Consensus 194 l~~le~g~~~rvG~~~-----------~~~~dVRli~AT~~~l----------------------------~~~~~~--- 231 (403)
T COG1221 194 LRVLEEGEYRRVGGSQ-----------PRPVDVRLICATTEDL----------------------------EEAVLA--- 231 (403)
T ss_pred HHHHHCCCEEECCCCC-----------CCCCCCEEEECCCCCH----------------------------HHHHHH---
T ss_conf 9998718657668888-----------8677740451356687----------------------------999874---
Q ss_pred HHHHHHCHHHHHHH-CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHH
Q ss_conf 67775220689872-07842672111057899998742677999999998744989999689999999955106787423
Q gi|254780271|r 292 EDLVKFGLIPEFIG-RLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARG 370 (424)
Q Consensus 292 ~DL~~~gliPEl~G-RlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~ 370 (424)
T Consensus 232 ------g--~dl~~rl~~~~I~LPpLrER-~~Di~~L~e-~Fl~~~~~~l~~~--~~~~~~~a~~~L~~y~~pGNi--rE 297 (403)
T COG1221 232 ------G--ADLTRRLNILTITLPPLRER-KEDILLLAE-HFLKSEARRLGLP--LSVDSPEALRALLAYDWPGNI--RE 297 (403)
T ss_pred ------H--CCHHHHHCCCEECCCCHHHC-HHHHHHHHH-HHHHHHHHHCCCC--CCCCCHHHHHHHHHCCCCCCH--HH
T ss_conf ------0--52556416754318972435-555999999-9999999973999--888889999999848899839--99
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 6899999967774
Q gi|254780271|r 371 LRSILEKILLDTM 383 (424)
Q Consensus 371 LrtIiE~iLedim 383 (424)
T Consensus 298 LkN~Ve~~~~~~~ 310 (403)
T COG1221 298 LKNLVERAVAQAS 310 (403)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999735