HHsearch alignment for GI: 254780271 and conserved domain: COG1222
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones].
Probab=99.25 E-value=2.9e-11 Score=99.39 Aligned_cols=97 Identities=30% Similarity=0.559 Sum_probs=79.8
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 56835884073321769999999871853131012211111103556330357788765422776542233322333200
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKIS 191 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~ 191 (424)
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq-KYiGEG-aRlVRelF~lA----rekaPsIIFiDEIDAIg 257 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ-KYIGEG-ARLVRELFELA----REKAPSIIFIDEIDAIG 257 (406)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCHHHHH-HHHCCC-HHHHHHHHHHH----HHCCCEEEEEECHHHHH
T ss_conf 9971276689997588999998720586699942199999-983411-69999999987----41498499983112231
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 23333334432102568988753105
Q gi|254780271|r 192 RKSDNPSITRDVSGEGVQQALLKIME 217 (424)
Q Consensus 192 ~~~~~~~~~~dvs~~gvq~~LLkile 217 (424)
T Consensus 258 ~kR~d~~t~---gDrEVQRTmleLL~ 280 (406)
T COG1222 258 AKRFDSGTS---GDREVQRTMLELLN 280 (406)
T ss_pred CCCCCCCCC---CHHHHHHHHHHHHH
T ss_conf 111368888---50999999999998