HHsearch alignment for GI: 254780271 and conserved domain: COG1222

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones].
Probab=99.25  E-value=2.9e-11  Score=99.39  Aligned_cols=97  Identities=30%  Similarity=0.559  Sum_probs=79.8

Q ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             56835884073321769999999871853131012211111103556330357788765422776542233322333200
Q gi|254780271|r  112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKIS  191 (424)
Q Consensus       112 ~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~  191 (424)
T Consensus       184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq-KYiGEG-aRlVRelF~lA----rekaPsIIFiDEIDAIg  257 (406)
T COG1222         184 PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ-KYIGEG-ARLVRELFELA----REKAPSIIFIDEIDAIG  257 (406)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCHHHHH-HHHCCC-HHHHHHHHHHH----HHCCCEEEEEECHHHHH
T ss_conf             9971276689997588999998720586699942199999-983411-69999999987----41498499983112231


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             23333334432102568988753105
Q gi|254780271|r  192 RKSDNPSITRDVSGEGVQQALLKIME  217 (424)
Q Consensus       192 ~~~~~~~~~~dvs~~gvq~~LLkile  217 (424)
T Consensus       258 ~kR~d~~t~---gDrEVQRTmleLL~  280 (406)
T COG1222         258 AKRFDSGTS---GDREVQRTMLELLN  280 (406)
T ss_pred             CCCCCCCCC---CHHHHHHHHHHHHH
T ss_conf             111368888---50999999999998