HHsearch alignment for GI: 254780271 and conserved domain: COG1239

Probab=98.47  E-value=2.6e-06  Score=64.71  Aligned_cols=147  Identities=22%  Similarity=0.292  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCC-CEEEHHH
Q ss_conf             789999974203085999999999998658875212101355225683588407332176999999987185-3131012
Q gi|254780271|r   68 PQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDV-PFTMADA  146 (424)
Q Consensus        68 P~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~-PF~~vda  146 (424)
T Consensus         8 ~~~r~~~pf~aivGqd~lk~aL~l~a------v-------~--P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~-gc   71 (423)
T COG1239           8 EEIRENLPFTAIVGQDPLKLALGLNA------V-------D--PQIGGALIAGEKGTAKSTLARALADLLPEIEVVI-GC   71 (423)
T ss_pred             HHHHHCCCHHHHCCCHHHHHHHHHHH------C-------C--CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEC-CC
T ss_conf             77775166565437537778876530------2-------6--3104268766887527799999998679633216-88


Q ss_pred             ------------------------HHHHHH---HHCCCCCCCHHHHHHH--------------HHHHHHHHHHHHHHHHH
Q ss_conf             ------------------------211111---1035563303577887--------------65422776542233322
Q gi|254780271|r  147 ------------------------TTLTEA---GYVGEDVENIILKLLQ--------------AADYNVERAQRGIVYID  185 (424)
Q Consensus       147 ------------------------T~~TE~---GYvG~Dvesii~~L~~--------------~a~~~v~~a~~~iv~iD  185 (424)
T Consensus        72 ~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvD  151 (423)
T COG1239          72 PFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVD  151 (423)
T ss_pred             CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEECCEECCCCCCCHHHHCCCCCHHHHHHCCCCCCCCCCHHHCCCCEEEEE
T ss_conf             78899887055519998620232445422100312238876304330045679999726830027751100358879872


Q ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHH
Q ss_conf             33320023333334432102568988753105870102565564322243024310001
Q gi|254780271|r  186 EVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNI  244 (424)
Q Consensus       186 EidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~ni  244 (424)
T Consensus       152 EvnlL~d~--------------lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNP  196 (423)
T COG1239         152 EVNLLDDH--------------LVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNP  196 (423)
T ss_pred             CCCCCCHH--------------HHHHHHHHHHHCCCEEEECCEEECCCCCEEEEEECCC
T ss_conf             33435189--------------9999999997177403357503136761799964485